| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is apaH [H]
Identifier: 119775953
GI number: 119775953
Start: 3359811
End: 3360623
Strand: Direct
Name: apaH [H]
Synonym: Sama_2821
Alternate gene names: 119775953
Gene position: 3359811-3360623 (Clockwise)
Preceding gene: 119775952
Following gene: 119775954
Centisome position: 78.02
GC content: 54.74
Gene sequence:
>813_bases ATGGCGCGATACTTTGTCGGCGACATCCAGGGCTGTTATGAAGAGCTGATGCGGCTGCTCCTGCGGGTAGACTTTCATCC GTCGCGGGATGAACTCTGGGCCGTGGGCGATCTGGTTGCCAGGGGGCCCGAGTCCCACAAGGTGTTGGGCTTTTTCACCT CATTGGGTGATGCCGCCAAAGCCGTGCTGGGTAATCATGATTTGCATCTGCTTGCCATACAGGCCGGGCTCAAACGTCCC AAACCCAGCGACAAGCTTAAAAAGCTTTTGGAATCCAAACACCTGCCTGGGTTTATTCACTGGGTGCGCCATCAACCCCT GATGCGGGAGCTTCCCGAACATAAGCTCATCATGACCCATGCCGGGGTGCCTCCCCAATGGGATTTGCCCACACTGCGGG AAGAAGCAAGCGAAGTGAACAAGGTACTGATGAGCGACACTTACCTTGACCTGATAGGCAGCATGTACACCGAAGAGCCG GAGAGTTGGGATCCCGATGCATCTGGATTTCTGAGGCACAGATACTGTATCGACGCCCTGACGCGGATGCGCTTTCTTTA CCTCGACGGTCGCCTGGACTTTGCCTGCAAAAAGCCCCCCGCCGACTGCGAAGGCTTGGCCTTGAAGCCCTGGTTTGAAT TCCCGTCTAAGTTGGATGATTTTACCCTGGTGTTCGGTCATTGGGCCGCCCTGATGGGAAAAACAGATAATCCCAGGCGT ATAGCCTTGGACACCGGCTGCTGTTGGGGTGAAGACCTCACACTCTGGCACCTTGAAACCGGGGAAAAAATTACCCAAAA GAAGTTAAAATAG
Upstream 100 bases:
>100_bases AGGCCGCTACGGTATGGTCTGGGAAGATGGAAAACCGTTTCAGGCCGCCATTCCCACCTTCCGCCTGGCCGTGCCCGGCG TACTGCATTAATTCTCCGCC
Downstream 100 bases:
>100_bases GGTTAAACTAAAGCTCGAAGAGGCCGATACAAAAGGGCCGCGCGTCAAAGCTCCATACTGCTTTCTGATTCGGGAAAAAA ACTAAAACATCGCCGGAGTG
Product: diadenosine tetraphosphatase
Products: NA
Alternate protein names: Ap4A hydrolase; Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase; Diadenosine tetraphosphatase [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MARYFVGDIQGCYEELMRLLLRVDFHPSRDELWAVGDLVARGPESHKVLGFFTSLGDAAKAVLGNHDLHLLAIQAGLKRP KPSDKLKKLLESKHLPGFIHWVRHQPLMRELPEHKLIMTHAGVPPQWDLPTLREEASEVNKVLMSDTYLDLIGSMYTEEP ESWDPDASGFLRHRYCIDALTRMRFLYLDGRLDFACKKPPADCEGLALKPWFEFPSKLDDFTLVFGHWAALMGKTDNPRR IALDTGCCWGEDLTLWHLETGEKITQKKLK
Sequences:
>Translated_270_residues MARYFVGDIQGCYEELMRLLLRVDFHPSRDELWAVGDLVARGPESHKVLGFFTSLGDAAKAVLGNHDLHLLAIQAGLKRP KPSDKLKKLLESKHLPGFIHWVRHQPLMRELPEHKLIMTHAGVPPQWDLPTLREEASEVNKVLMSDTYLDLIGSMYTEEP ESWDPDASGFLRHRYCIDALTRMRFLYLDGRLDFACKKPPADCEGLALKPWFEFPSKLDDFTLVFGHWAALMGKTDNPRR IALDTGCCWGEDLTLWHLETGEKITQKKLK >Mature_269_residues ARYFVGDIQGCYEELMRLLLRVDFHPSRDELWAVGDLVARGPESHKVLGFFTSLGDAAKAVLGNHDLHLLAIQAGLKRPK PSDKLKKLLESKHLPGFIHWVRHQPLMRELPEHKLIMTHAGVPPQWDLPTLREEASEVNKVLMSDTYLDLIGSMYTEEPE SWDPDASGFLRHRYCIDALTRMRFLYLDGRLDFACKKPPADCEGLALKPWFEFPSKLDDFTLVFGHWAALMGKTDNPRRI ALDTGCCWGEDLTLWHLETGEKITQKKLK
Specific function: Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP [H]
COG id: COG0639
COG function: function code T; Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ap4A hydrolase family [H]
Homologues:
Organism=Escherichia coli, GI1786234, Length=267, Percent_Identity=47.1910112359551, Blast_Score=253, Evalue=1e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004617 - InterPro: IPR004843 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: =3.6.1.41 [H]
Molecular weight: Translated: 30933; Mature: 30802
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYFVGDIQGCYEELMRLLLRVDFHPSRDELWAVGDLVARGPESHKVLGFFTSLGDAAK CCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AVLGNHDLHLLAIQAGLKRPKPSDKLKKLLESKHLPGFIHWVRHQPLMRELPEHKLIMTH HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCEEEEEE AGVPPQWDLPTLREEASEVNKVLMSDTYLDLIGSMYTEEPESWDPDASGFLRHRYCIDAL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TRMRFLYLDGRLDFACKKPPADCEGLALKPWFEFPSKLDDFTLVFGHWAALMGKTDNPRR HHHHEEEECCCCCEEECCCCCCCCCCEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCE IALDTGCCWGEDLTLWHLETGEKITQKKLK EEEECCCCCCCCCEEEEECCCCHHHHHHCC >Mature Secondary Structure ARYFVGDIQGCYEELMRLLLRVDFHPSRDELWAVGDLVARGPESHKVLGFFTSLGDAAK CCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AVLGNHDLHLLAIQAGLKRPKPSDKLKKLLESKHLPGFIHWVRHQPLMRELPEHKLIMTH HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCCCEEEEEE AGVPPQWDLPTLREEASEVNKVLMSDTYLDLIGSMYTEEPESWDPDASGFLRHRYCIDAL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TRMRFLYLDGRLDFACKKPPADCEGLALKPWFEFPSKLDDFTLVFGHWAALMGKTDNPRR HHHHEEEECCCCCEEECCCCCCCCCCEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCE IALDTGCCWGEDLTLWHLETGEKITQKKLK EEEECCCCCCCCCEEEEECCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]