| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775805
Identifier: 119775805
GI number: 119775805
Start: 3198913
End: 3199593
Strand: Direct
Name: 119775805
Synonym: Sama_2673
Alternate gene names: NA
Gene position: 3198913-3199593 (Clockwise)
Preceding gene: 119775803
Following gene: 119775806
Centisome position: 74.29
GC content: 51.1
Gene sequence:
>681_bases ATGCCAGTAAACTCCATTTTGGGCGTGTTTGCAAAATCGCCAATCAAGCCGCTGCAAGAGCACATCGATAAAGTGCACGA GTGCGCCAACTTCCTCATCCCCTTCTTCGAAGCCACGACTTCGGGAGATTGGGATACAGCCACAGAGCTTCGCAAACAAA TCAACAAAGCAGAAAAGGAAGCGGACGCTCTTAAGCGTGAAATCCGTTTGACCCTGCCTGGCGGTTTGTTCATGCCTGTA GAACGGACTGACCTGCTGGAGCTTTTAACCCAGCAAGATAAGATTGCCAATAAAACAAAAGACATCTCCGGCCGCATCAT AGGCCGTAACCTCGTCATTCCTGCACCTATCCAGGAACCTTTTATGGCTTACCTCAAGCGTTGTCTGGACGCTGTGGCCA TGGCCAAAGAAGCTATCAACGAACTCGACGAACTGCTTGAAGCCGGTTTCCGTGGTCGTGAAGTCGCCCTGGTAGAAAAA ATGGTCGGTGAACTCGATGCCATCGAAGAAGACACTGACGCACTGCAAATCACCGTACGCCGCGGTCTCTATGCCGTTGA AGAAGGCATGAGCGCCGTTGATGTGATGTTCCTTTATAAGATCATCGAGTGGGTTGGCGATTTGGCCGATCTCTCAGAGC GTGTCGGTTCCCGCCTTGAGCTGATGTTAGCTCGCGTATAA
Upstream 100 bases:
>100_bases TGCGTTTTTTAGGTAAAAACACAGTTTCAATACGTGGACGCTTGGGTTACCATGCGCCCGCAATTTCCAATAGTGGAATA ACCTACATAGGTAAACGGCT
Downstream 100 bases:
>100_bases CGAAGGTTATAAAATATGGTTGATATATTTGTCACCTATGGCCCGTGGCTGATTGCCATCGCGGCCGCATTCGGTTTCCT GATGGCCTGGGGTATTGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPV ERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEK MVGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV
Sequences:
>Translated_226_residues MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPV ERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEK MVGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV >Mature_225_residues PVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPVE RTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKM VGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV
Specific function: Unknown
COG id: COG1392
COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0111 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002727 - InterPro: IPR018445 [H]
Pfam domain/function: PF01865 PhoU_div [H]
EC number: NA
Molecular weight: Translated: 25326; Mature: 25195
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKE CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ADALKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEP HHHHHHHHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCH FMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKMVGELDAIEEDTDALQITVR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH RGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKE CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH ADALKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEP HHHHHHHHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCH FMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKMVGELDAIEEDTDALQITVR HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH RGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]