Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775805

Identifier: 119775805

GI number: 119775805

Start: 3198913

End: 3199593

Strand: Direct

Name: 119775805

Synonym: Sama_2673

Alternate gene names: NA

Gene position: 3198913-3199593 (Clockwise)

Preceding gene: 119775803

Following gene: 119775806

Centisome position: 74.29

GC content: 51.1

Gene sequence:

>681_bases
ATGCCAGTAAACTCCATTTTGGGCGTGTTTGCAAAATCGCCAATCAAGCCGCTGCAAGAGCACATCGATAAAGTGCACGA
GTGCGCCAACTTCCTCATCCCCTTCTTCGAAGCCACGACTTCGGGAGATTGGGATACAGCCACAGAGCTTCGCAAACAAA
TCAACAAAGCAGAAAAGGAAGCGGACGCTCTTAAGCGTGAAATCCGTTTGACCCTGCCTGGCGGTTTGTTCATGCCTGTA
GAACGGACTGACCTGCTGGAGCTTTTAACCCAGCAAGATAAGATTGCCAATAAAACAAAAGACATCTCCGGCCGCATCAT
AGGCCGTAACCTCGTCATTCCTGCACCTATCCAGGAACCTTTTATGGCTTACCTCAAGCGTTGTCTGGACGCTGTGGCCA
TGGCCAAAGAAGCTATCAACGAACTCGACGAACTGCTTGAAGCCGGTTTCCGTGGTCGTGAAGTCGCCCTGGTAGAAAAA
ATGGTCGGTGAACTCGATGCCATCGAAGAAGACACTGACGCACTGCAAATCACCGTACGCCGCGGTCTCTATGCCGTTGA
AGAAGGCATGAGCGCCGTTGATGTGATGTTCCTTTATAAGATCATCGAGTGGGTTGGCGATTTGGCCGATCTCTCAGAGC
GTGTCGGTTCCCGCCTTGAGCTGATGTTAGCTCGCGTATAA

Upstream 100 bases:

>100_bases
TGCGTTTTTTAGGTAAAAACACAGTTTCAATACGTGGACGCTTGGGTTACCATGCGCCCGCAATTTCCAATAGTGGAATA
ACCTACATAGGTAAACGGCT

Downstream 100 bases:

>100_bases
CGAAGGTTATAAAATATGGTTGATATATTTGTCACCTATGGCCCGTGGCTGATTGCCATCGCGGCCGCATTCGGTTTCCT
GATGGCCTGGGGTATTGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPV
ERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEK
MVGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV

Sequences:

>Translated_226_residues
MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPV
ERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEK
MVGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV
>Mature_225_residues
PVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKEADALKREIRLTLPGGLFMPVE
RTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEPFMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKM
VGELDAIEEDTDALQITVRRGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV

Specific function: Unknown

COG id: COG1392

COG function: function code P; Phosphate transport regulator (distant homolog of PhoU)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0111 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002727
- InterPro:   IPR018445 [H]

Pfam domain/function: PF01865 PhoU_div [H]

EC number: NA

Molecular weight: Translated: 25326; Mature: 25195

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKE
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ADALKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEP
HHHHHHHHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCH
FMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKMVGELDAIEEDTDALQITVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
RGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVNSILGVFAKSPIKPLQEHIDKVHECANFLIPFFEATTSGDWDTATELRKQINKAEKE
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ADALKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKTKDISGRIIGRNLVIPAPIQEP
HHHHHHHHHEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCH
FMAYLKRCLDAVAMAKEAINELDELLEAGFRGREVALVEKMVGELDAIEEDTDALQITVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
RGLYAVEEGMSAVDVMFLYKIIEWVGDLADLSERVGSRLELMLARV
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]