| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ygjG [C]
Identifier: 119775781
GI number: 119775781
Start: 3174516
End: 3175856
Strand: Direct
Name: ygjG [C]
Synonym: Sama_2649
Alternate gene names: 119775781
Gene position: 3174516-3175856 (Clockwise)
Preceding gene: 119775779
Following gene: 119775782
Centisome position: 73.72
GC content: 55.93
Gene sequence:
>1341_bases ATGGTCGACTTCAACGCAACTACAGGACAAGACACACCGTCCCTTGAGCACTACTGGATGCCGTTCACCGCGAACCGCCA GTTCAAAGCCAGCCCACGATTGCTGGCCAGCGCAGAGGGTATGTTTTACAAAGATGTTGATGGCAATCCGGTACTCGATT CCACCGCAGGCCTTTGGTGTTGTAACGCCGGCCACGGCAGAAAGAAAATCAGTGAAGCCGTCAGCCACCAAATTCGGGAA CTGGATTACGCCCCATCATTTCAAATGGGTCATCCACTGGCATTCGAACTGGCCAGTCGCCTTGCCGACATAGCACCGGC GGGACTGAATCGCATCTTCTTTACCAACTCAGGCAGTGAATCTGTCGACACGGCGCTGAAAATGGCGTTGGCCTACCACA GGGCTAATGGTCAACCTACCCGAACCCGCTTTATTGGCCGTGAACTTGGCTATCACGGTGTCGGTTTCGGTGGCATCTCC GTGGGCGGCATCGGTAACAACCGCCGCACTTTCAGCCAGCAACTGCTGCAGGGCGTCGACCACCTGCCCCACACGCTGGA TATCGCCAACAACGCCTTTTCCCGCGGATTTCCCGCCCATGGCCTCGAAAAAGCCGAAGTGCTGGAGCAGCTCATTACCC TCCACGGCGCTGAAAACATTGCCGCCGTTATCGTTGAGCCCATGTCCGGCTCCGCTGGCGTGATATTGCCGCCTCAGGGT TACCTAAAACGTCTGCGCGACATTACCAAGAAACATGGCATCCTGCTGATTTTTGATGAAGTCATCACAGGTTTTGGCCG TGTTGGTGACGCTTTTGCCAGTCAGCGCTGGGGCGTTGTGCCCGATTTGATGACCACCGCCAAGGCGCTGAACAACGGTG CCATTCCCATGGGCGCAGTGTTTGTGAGCCAGGATGTACACGATGCCTGCATGACTGGCCCGGAAGAACTGATTGAATTT TTCCACGGCTACACCTATTCCGGTCATCCGGTGGCTGCAGCCGCGGCATTGGCCACCCTGGATATTTACCAGGAAGAAAA ACTGTTTGAGCGTACCAAAGAGCTTGAAGGCTACTGGGAAGATGCAGTGCACAGTCTAAGAGACCTGCCGAATGTGATTG ATATCCGCAACACAGGTTTGGTCGCCGGGGTGCAACTGTCCCCCAATGATGAAGGCCCGGGACGCCGGGGTTACAAGGTG TTCGAGCGCTGCTTCAGAAACGGCACCCTGGTGCGGGTGACAGGCGACATCATCGCCATGTCTCCACCACTCATCGTGGA AAAGCAGCACATCGACCAGATAGTTAACACCCTCGGCGATGCCATTCGCGCCGTTGGATGA
Upstream 100 bases:
>100_bases ATGCACAAAGGTATTCCATGTTCATTATTTCTGACATAGCATAGCGAATATTAACCACCTTAAAAACTCAAACAACCGAT AGGATCAAGGTAAATAATGT
Downstream 100 bases:
>100_bases CCCTTTGTCAGCACAGAATTAACAGGTAGCCAAAGATATCCATGCAAAGCATTACTCATTTTGTAAATGGCCAGCACACG GCCCCCAGTGCCCGCACCCA
Product: beta alanine--pyruvate transaminase
Products: NA
Alternate protein names: Omega-APT; Beta-alanine--pyruvate aminotransferase [H]
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWCCNAGHGRKKISEAVSHQIRE LDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSESVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGIS VGGIGNNRRTFSQQLLQGVDHLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAVFVSQDVHDACMTGPEELIEF FHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWEDAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKV FERCFRNGTLVRVTGDIIAMSPPLIVEKQHIDQIVNTLGDAIRAVG
Sequences:
>Translated_446_residues MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWCCNAGHGRKKISEAVSHQIRE LDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSESVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGIS VGGIGNNRRTFSQQLLQGVDHLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAVFVSQDVHDACMTGPEELIEF FHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWEDAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKV FERCFRNGTLVRVTGDIIAMSPPLIVEKQHIDQIVNTLGDAIRAVG >Mature_446_residues MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWCCNAGHGRKKISEAVSHQIRE LDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSESVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGIS VGGIGNNRRTFSQQLLQGVDHLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAVFVSQDVHDACMTGPEELIEF FHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWEDAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKV FERCFRNGTLVRVTGDIIAMSPPLIVEKQHIDQIVNTLGDAIRAVG
Specific function: Catalyzes transamination between a variety of omega- amino acids, mono and diamines, and pyruvate. Plays a pivotal role in the metabolism of the omega amino acids [H]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI13994255, Length=447, Percent_Identity=27.2930648769575, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI4557809, Length=418, Percent_Identity=27.2727272727273, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI37574042, Length=438, Percent_Identity=26.2557077625571, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI226442705, Length=438, Percent_Identity=26.4840182648402, Blast_Score=116, Evalue=4e-26, Organism=Homo sapiens, GI284507298, Length=227, Percent_Identity=32.5991189427313, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI226442709, Length=402, Percent_Identity=26.865671641791, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI24119277, Length=445, Percent_Identity=26.0674157303371, Blast_Score=111, Evalue=2e-24, Organism=Escherichia coli, GI145693181, Length=407, Percent_Identity=30.958230958231, Blast_Score=184, Evalue=1e-47, Organism=Escherichia coli, GI1786991, Length=429, Percent_Identity=30.3030303030303, Blast_Score=165, Evalue=4e-42, Organism=Escherichia coli, GI1788044, Length=406, Percent_Identity=26.6009852216749, Blast_Score=145, Evalue=6e-36, Organism=Escherichia coli, GI1789759, Length=403, Percent_Identity=29.0322580645161, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1787560, Length=439, Percent_Identity=28.0182232346241, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1789016, Length=417, Percent_Identity=25.6594724220624, Blast_Score=135, Evalue=8e-33, Organism=Escherichia coli, GI1786349, Length=350, Percent_Identity=29.7142857142857, Blast_Score=102, Evalue=4e-23, Organism=Caenorhabditis elegans, GI32564660, Length=439, Percent_Identity=28.0182232346241, Blast_Score=157, Evalue=1e-38, Organism=Caenorhabditis elegans, GI25144271, Length=428, Percent_Identity=28.5046728971963, Blast_Score=147, Evalue=1e-35, Organism=Caenorhabditis elegans, GI25144274, Length=233, Percent_Identity=35.6223175965665, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI71992977, Length=441, Percent_Identity=26.3038548752834, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17541228, Length=441, Percent_Identity=23.1292517006803, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323470, Length=433, Percent_Identity=25.635103926097, Blast_Score=152, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6324386, Length=407, Percent_Identity=28.2555282555283, Blast_Score=125, Evalue=1e-29, Organism=Saccharomyces cerevisiae, GI6324432, Length=414, Percent_Identity=26.5700483091787, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI161085790, Length=447, Percent_Identity=27.7404921700224, Blast_Score=144, Evalue=1e-34, Organism=Drosophila melanogaster, GI21357415, Length=427, Percent_Identity=27.4004683840749, Blast_Score=138, Evalue=9e-33, Organism=Drosophila melanogaster, GI28574759, Length=446, Percent_Identity=27.5784753363229, Blast_Score=137, Evalue=1e-32, Organism=Drosophila melanogaster, GI21356575, Length=433, Percent_Identity=25.635103926097, Blast_Score=118, Evalue=7e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.18 [H]
Molecular weight: Translated: 48565; Mature: 48565
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWC CCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCCEEE CNAGHGRKKISEAVSHQIRELDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSE ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCH SVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGISVGGIGNNRRTFSQQLLQGVD HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH HLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG HCCCHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCHH YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAV HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHE FVSQDVHDACMTGPEELIEFFHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWE EECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKVFERCFRNGTLVRVTGDIIAM HHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEE SPPLIVEKQHIDQIVNTLGDAIRAVG CCCCEECHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWC CCCCCCCCCCCCCCCCEEECCEECCCCCCCCCCHHCCCCCCEEECCCCCCCCCCCCCEEE CNAGHGRKKISEAVSHQIRELDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSE ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCH SVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGISVGGIGNNRRTFSQQLLQGVD HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH HLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG HCCCHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCHH YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAV HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHE FVSQDVHDACMTGPEELIEFFHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWE EECCCHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKVFERCFRNGTLVRVTGDIIAM HHHHHHHCCCCCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEE SPPLIVEKQHIDQIVNTLGDAIRAVG CCCCEECHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1618757; 6822556; 2500426 [H]