| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is btuB [H]
Identifier: 119775750
GI number: 119775750
Start: 3134018
End: 3136567
Strand: Reverse
Name: btuB [H]
Synonym: Sama_2618
Alternate gene names: 119775750
Gene position: 3136567-3134018 (Counterclockwise)
Preceding gene: 119775754
Following gene: 119775746
Centisome position: 72.84
GC content: 51.53
Gene sequence:
>2550_bases ATGAAAGCTCAAAAATGGATTCTGAGCAGTTGTGCGTTAGCCGTTGCCTTGGCGCTGCCTTCTGTTGCTGTCGCCGCAGA AGATGGTGCAAAAGTTGAGCGTCTGGAAGTCACAGGCTCTCGCATCAAGCGAACTGACATAGAAGGCCCATCACCCATCC AATCCATTGGCAAAGACGACATTGCCAATATGGGTTTTGATAACCTGCAACAATTACTCGAGAAAATGCCTGCCAACGGC GCCGGTGCTTTTTCTACCCGGGGTAACAGTCAGGATTCTACCGCTAACGGCTCTGCCTCTATCAGCCTCAGGGGCCTTGG TCCGGATGCGACCCTGGTACTCATTAACGGTCGCCGCGTAGCCATCAGCTCATTTGCCGAAGGCGTGAGCAACTCCTTCG TTGACATTAACAACATCCCGGTTTCGGCCATTGAGCGCATCGATATTCTGAAAGACGGCGCCTCTGCAATTTACGGCTCC GACGCCATTGCCGGTGTAGTGAACATTGTTCTGAAGAAGGATATCGAAGGCATCGAAGTCAACCTCGGTTATGGTGGCGC TACAGGCCCCCATTATGACGAAAAAACGGCGAACCTGGTTTGGGGTACCAAGGGTGATAAAGGCACTGCCTCTATCATTC TCGACTACTTTAAGAACTCTACCCTCAGCGCCGATGAAATGGGCCGTTTCGGTACCGCGAACCAAGAGCCCTATGGCGGC GATGACAACCGTTCCTCCCGTGGTTACCCTGGTTATTTCTATGTCGATGGCGTGAAAACTCCGGACCCCGATTGTCCTGC CGATCGCCTCACGGGTAGTGGCAGTTGTTTGTTCGACTACGGTCCTTATAACCTCACCATCCCTGCCGCTGAGCGTGTAG GTGCCATAGGTCAATTCGAGTATTTCTTCGATAATGATGTGACTGCTTTTCTGGAATTCGCTGTGCAGCACAACACTTCC GAAGCCGGCGGTGCGGCAACTCCACTCGATGAATCCGCAGGCTTGACTGTGCCTGGTACCCACCCCGATAACCCATGGGG TAAAGACATTCTGATTGGTCGTTATCGTCCGGTGGACGCTGGTGCACGCCGTTGGGATATTGAATCGGACTCGATGAGAC TGGTTGCTGGCTTGCGTGGCACCCTGAATGAGTGGGATTGGGAAGTTGCTGCACAAAAGGGACGTCAGGAACAGACTCAG ACCGGTGACCGTAGTCAAGGTTGGGTTCGTGTGGATTACTTGCAGCGTGAGATTGATGCTGGCCGTTACAATCCATTTGG AGCTGCCGTCAACTCACCCGACGTTATCGATGCTATCACCACCAGTCTGGTGCGTCAGGGCGTCTCCCACATGACGGCTT ACAATGCCAGCATTACCGGTCAGGCGTTCACCCTGGCCGAACGTGATGTGATGATGGCTGCGGGCGTTGAATATCGTGAA GAAGACGTAAGCGACGTGCCCGATGAGCAGTTCCAGCGTGGGCTGATTTTCGGTACCGAGGCTGTTTCTGCAAACGCCGA GCGTGACCAATGGGCTGCCTACGTCGAGTTCTCTATTCCGGTTACTGATAACTTTGAACTGCAGCTGGCAGGTCGGTACG ACAATTACAGCGATTTTGGCACCACCACCAATCCAAAGGTGGCTTTCCAATGGGGTATCACTGACGAAATCACCGCCCGT GGTTCCTGGGCTACCGGCTTCCGCGCACCATCCCTGGCACAGATTGGCCTGGGCCCTTCACAGGAAAGTTTGTTCCTGGA TGATTACTACTTCTGCCAGGCAAATGGTTTAGATGCATCCGAGTGTGAGAATTTGGACCAAAACTTCCTGTTCTCAGGGA ACAAAGAGCTGGAGGCTGAAGAGTCTGAAAGTTGGAACGTGGGTATGATTTACGCCCCGAATCAGTCATTTGATCTGAGC TTGGACTGGTACAACATCACGCAGGACAATAAGATCGACAAGCTTGAGCCTCAAGATGTGTATGACGCCAATTGCGGCTC TCAGAACAGTCCTATTTGTCAGCGATTGGCTCCGGTTGGCGCTGACTCGTTGGGAACGATTGACAAGATCTTGTCCAGCT TTGTGAATATCAGCTCTCAGGAAGTGCAAGGTATCGACGTGTCCAGTCACTATACTTTGGCTACCGATGGTTATGGTGAC GTAAAGTTTGGGCTGGAATACAGCTATCTGATGGACTTTGAGAAAGGTGATAAAGACTGGACCGGAAAGTATCGTTTCCC AGAGCACCGTTGGTTAGGTACTACTAATTGGACCAAAGATGATTTGTCAGTCAACCTCAACCTTAGCTACATAGGTGAAT TTGCTGACTATAATGAAACCCGCAACGTAGACGCCCAGCTGTTGGTGGATATGTCAGCGTCCTATCGCTTCAGTGAAACT TTGAAGTGGACTATTGGTATGAATAACGTGCTGGATGAAGAGCCTCCATTTGCCATTGGTGATGGCGATGGCGATCTCTA TGGCTACGTGATGGCGACTCATAACCCAATGGGACGTTATGCCTACATCAAGCTGAATATCAACTTCTGA
Upstream 100 bases:
>100_bases AATTAACAAATTGGATAGCTTGGTGGATGATCTCACTATCGGTGGCAGTCTGCTGTCGCTATCGAAAAATAACAACTATC CAAATTGCTGGGGAATGATT
Downstream 100 bases:
>100_bases TAGCTTGAAGCAGATGAACAAAAACGGCATCCACAGGATGCCGTTTTTTTATGGCTCATCATATTTGGCTCATAGTCCCA AATGCCTATTGGTTTTGGCA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MKAQKWILSSCALAVALALPSVAVAAEDGAKVERLEVTGSRIKRTDIEGPSPIQSIGKDDIANMGFDNLQQLLEKMPANG AGAFSTRGNSQDSTANGSASISLRGLGPDATLVLINGRRVAISSFAEGVSNSFVDINNIPVSAIERIDILKDGASAIYGS DAIAGVVNIVLKKDIEGIEVNLGYGGATGPHYDEKTANLVWGTKGDKGTASIILDYFKNSTLSADEMGRFGTANQEPYGG DDNRSSRGYPGYFYVDGVKTPDPDCPADRLTGSGSCLFDYGPYNLTIPAAERVGAIGQFEYFFDNDVTAFLEFAVQHNTS EAGGAATPLDESAGLTVPGTHPDNPWGKDILIGRYRPVDAGARRWDIESDSMRLVAGLRGTLNEWDWEVAAQKGRQEQTQ TGDRSQGWVRVDYLQREIDAGRYNPFGAAVNSPDVIDAITTSLVRQGVSHMTAYNASITGQAFTLAERDVMMAAGVEYRE EDVSDVPDEQFQRGLIFGTEAVSANAERDQWAAYVEFSIPVTDNFELQLAGRYDNYSDFGTTTNPKVAFQWGITDEITAR GSWATGFRAPSLAQIGLGPSQESLFLDDYYFCQANGLDASECENLDQNFLFSGNKELEAEESESWNVGMIYAPNQSFDLS LDWYNITQDNKIDKLEPQDVYDANCGSQNSPICQRLAPVGADSLGTIDKILSSFVNISSQEVQGIDVSSHYTLATDGYGD VKFGLEYSYLMDFEKGDKDWTGKYRFPEHRWLGTTNWTKDDLSVNLNLSYIGEFADYNETRNVDAQLLVDMSASYRFSET LKWTIGMNNVLDEEPPFAIGDGDGDLYGYVMATHNPMGRYAYIKLNINF
Sequences:
>Translated_849_residues MKAQKWILSSCALAVALALPSVAVAAEDGAKVERLEVTGSRIKRTDIEGPSPIQSIGKDDIANMGFDNLQQLLEKMPANG AGAFSTRGNSQDSTANGSASISLRGLGPDATLVLINGRRVAISSFAEGVSNSFVDINNIPVSAIERIDILKDGASAIYGS DAIAGVVNIVLKKDIEGIEVNLGYGGATGPHYDEKTANLVWGTKGDKGTASIILDYFKNSTLSADEMGRFGTANQEPYGG DDNRSSRGYPGYFYVDGVKTPDPDCPADRLTGSGSCLFDYGPYNLTIPAAERVGAIGQFEYFFDNDVTAFLEFAVQHNTS EAGGAATPLDESAGLTVPGTHPDNPWGKDILIGRYRPVDAGARRWDIESDSMRLVAGLRGTLNEWDWEVAAQKGRQEQTQ TGDRSQGWVRVDYLQREIDAGRYNPFGAAVNSPDVIDAITTSLVRQGVSHMTAYNASITGQAFTLAERDVMMAAGVEYRE EDVSDVPDEQFQRGLIFGTEAVSANAERDQWAAYVEFSIPVTDNFELQLAGRYDNYSDFGTTTNPKVAFQWGITDEITAR GSWATGFRAPSLAQIGLGPSQESLFLDDYYFCQANGLDASECENLDQNFLFSGNKELEAEESESWNVGMIYAPNQSFDLS LDWYNITQDNKIDKLEPQDVYDANCGSQNSPICQRLAPVGADSLGTIDKILSSFVNISSQEVQGIDVSSHYTLATDGYGD VKFGLEYSYLMDFEKGDKDWTGKYRFPEHRWLGTTNWTKDDLSVNLNLSYIGEFADYNETRNVDAQLLVDMSASYRFSET LKWTIGMNNVLDEEPPFAIGDGDGDLYGYVMATHNPMGRYAYIKLNINF >Mature_849_residues MKAQKWILSSCALAVALALPSVAVAAEDGAKVERLEVTGSRIKRTDIEGPSPIQSIGKDDIANMGFDNLQQLLEKMPANG AGAFSTRGNSQDSTANGSASISLRGLGPDATLVLINGRRVAISSFAEGVSNSFVDINNIPVSAIERIDILKDGASAIYGS DAIAGVVNIVLKKDIEGIEVNLGYGGATGPHYDEKTANLVWGTKGDKGTASIILDYFKNSTLSADEMGRFGTANQEPYGG DDNRSSRGYPGYFYVDGVKTPDPDCPADRLTGSGSCLFDYGPYNLTIPAAERVGAIGQFEYFFDNDVTAFLEFAVQHNTS EAGGAATPLDESAGLTVPGTHPDNPWGKDILIGRYRPVDAGARRWDIESDSMRLVAGLRGTLNEWDWEVAAQKGRQEQTQ TGDRSQGWVRVDYLQREIDAGRYNPFGAAVNSPDVIDAITTSLVRQGVSHMTAYNASITGQAFTLAERDVMMAAGVEYRE EDVSDVPDEQFQRGLIFGTEAVSANAERDQWAAYVEFSIPVTDNFELQLAGRYDNYSDFGTTTNPKVAFQWGITDEITAR GSWATGFRAPSLAQIGLGPSQESLFLDDYYFCQANGLDASECENLDQNFLFSGNKELEAEESESWNVGMIYAPNQSFDLS LDWYNITQDNKIDKLEPQDVYDANCGSQNSPICQRLAPVGADSLGTIDKILSSFVNISSQEVQGIDVSSHYTLATDGYGD VKFGLEYSYLMDFEKGDKDWTGKYRFPEHRWLGTTNWTKDDLSVNLNLSYIGEFADYNETRNVDAQLLVDMSASYRFSET LKWTIGMNNVLDEEPPFAIGDGDGDLYGYVMATHNPMGRYAYIKLNINF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=163, Percent_Identity=34.9693251533742, Blast_Score=88, Evalue=3e-18, Organism=Escherichia coli, GI1790405, Length=233, Percent_Identity=27.4678111587983, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1786798, Length=172, Percent_Identity=29.6511627906977, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 92769; Mature: 92769
Theoretical pI: Translated: 4.15; Mature: 4.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAQKWILSSCALAVALALPSVAVAAEDGAKVERLEVTGSRIKRTDIEGPSPIQSIGKDD CCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEEECCCCCCCHHHHCCCHH IANMGFDNLQQLLEKMPANGAGAFSTRGNSQDSTANGSASISLRGLGPDATLVLINGRRV HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE AISSFAEGVSNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIVLKKDIEGIEV EHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCEEEE NLGYGGATGPHYDEKTANLVWGTKGDKGTASIILDYFKNSTLSADEMGRFGTANQEPYGG EECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCC DDNRSSRGYPGYFYVDGVKTPDPDCPADRLTGSGSCLFDYGPYNLTIPAAERVGAIGQFE CCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCEEEEECCCEEEECCHHHCCCCEEEE YFFDNDVTAFLEFAVQHNTSEAGGAATPLDESAGLTVPGTHPDNPWGKDILIGRYRPVDA EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCC GARRWDIESDSMRLVAGLRGTLNEWDWEVAAQKGRQEQTQTGDRSQGWVRVDYLQREIDA CCEEECCCCCCEEEEEHHCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCEEEHHHHHHHCC GRYNPFGAAVNSPDVIDAITTSLVRQGVSHMTAYNASITGQAFTLAERDVMMAAGVEYRE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCEECCCEEEEECCCCCEECCCCHHH EDVSDVPDEQFQRGLIFGTEAVSANAERDQWAAYVEFSIPVTDNFELQLAGRYDNYSDFG HHHCCCCHHHHHCCEEEECHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCC TTTNPKVAFQWGITDEITARGSWATGFRAPSLAQIGLGPSQESLFLDDYYFCQANGLDAS CCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEEECCCCCHH ECENLDQNFLFSGNKELEAEESESWNVGMIYAPNQSFDLSLDWYNITQDNKIDKLEPQDV HHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCC YDANCGSQNSPICQRLAPVGADSLGTIDKILSSFVNISSQEVQGIDVSSHYTLATDGYGD CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCEEECCCCEEEEECCCCC VKFGLEYSYLMDFEKGDKDWTGKYRFPEHRWLGTTNWTKDDLSVNLNLSYIGEFADYNET EEECEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEEECHHCCCCC RNVDAQLLVDMSASYRFSETLKWTIGMNNVLDEEPPFAIGDGDGDLYGYVMATHNPMGRY CCCCEEEEEECCCCCEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCE AYIKLNINF EEEEEEECC >Mature Secondary Structure MKAQKWILSSCALAVALALPSVAVAAEDGAKVERLEVTGSRIKRTDIEGPSPIQSIGKDD CCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCEEECCCCCCCHHHHCCCHH IANMGFDNLQQLLEKMPANGAGAFSTRGNSQDSTANGSASISLRGLGPDATLVLINGRRV HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEE AISSFAEGVSNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIVLKKDIEGIEV EHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCEEEE NLGYGGATGPHYDEKTANLVWGTKGDKGTASIILDYFKNSTLSADEMGRFGTANQEPYGG EECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCC DDNRSSRGYPGYFYVDGVKTPDPDCPADRLTGSGSCLFDYGPYNLTIPAAERVGAIGQFE CCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCEEEEECCCEEEECCHHHCCCCEEEE YFFDNDVTAFLEFAVQHNTSEAGGAATPLDESAGLTVPGTHPDNPWGKDILIGRYRPVDA EEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCC GARRWDIESDSMRLVAGLRGTLNEWDWEVAAQKGRQEQTQTGDRSQGWVRVDYLQREIDA CCEEECCCCCCEEEEEHHCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCEEEHHHHHHHCC GRYNPFGAAVNSPDVIDAITTSLVRQGVSHMTAYNASITGQAFTLAERDVMMAAGVEYRE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCEECCCEEEEECCCCCEECCCCHHH EDVSDVPDEQFQRGLIFGTEAVSANAERDQWAAYVEFSIPVTDNFELQLAGRYDNYSDFG HHHCCCCHHHHHCCEEEECHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCC TTTNPKVAFQWGITDEITARGSWATGFRAPSLAQIGLGPSQESLFLDDYYFCQANGLDAS CCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCEEECCEEEEECCCCCHH ECENLDQNFLFSGNKELEAEESESWNVGMIYAPNQSFDLSLDWYNITQDNKIDKLEPQDV HHHCCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCC YDANCGSQNSPICQRLAPVGADSLGTIDKILSSFVNISSQEVQGIDVSSHYTLATDGYGD CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHCCEEECCCCEEEEECCCCC VKFGLEYSYLMDFEKGDKDWTGKYRFPEHRWLGTTNWTKDDLSVNLNLSYIGEFADYNET EEECEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHEEECHHCCCCC RNVDAQLLVDMSASYRFSETLKWTIGMNNVLDEEPPFAIGDGDGDLYGYVMATHNPMGRY CCCCEEEEEECCCCCEECCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCE AYIKLNINF EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA