| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775748
Identifier: 119775748
GI number: 119775748
Start: 3132978
End: 3133379
Strand: Direct
Name: 119775748
Synonym: Sama_2616
Alternate gene names: NA
Gene position: 3132978-3133379 (Clockwise)
Preceding gene: 119775747
Following gene: 119775749
Centisome position: 72.76
GC content: 49.25
Gene sequence:
>402_bases ATGCATGAACTCATCGAACAACTACAAGAAATGAGCGAACAGGTTCCAGTCCCACTGGAACTGCCTTCATTTGACCAACT GCTGGACGTTGAAGAAGCAATTCTCATCCCCTTACCGGCTGATTTGAAAGAATATCTGCTTAATGCAAGCGATGTGATTG TTGGCAGCCTGGAGCCCGTGACAGTGGCCGACCCCCATAGTCATACATATTTGTCAGAAGTCGCAGCCTATGCCTGGTCA ATCGGGCTGCCACGGGAGATGATCCCCATCTGTCAGAATGGCGATAACTTTTACTGTATCGATCAGGAAGGTCAGGTACA CTACTGGGCCTTTGGCGACTTCACCGAAGACCAGTGGGATTCCTTCTGGGAATGGGCTGAAGACGTCTGGATAAACAGTT AA
Upstream 100 bases:
>100_bases TTTTAGAAATAATGCGATAAATCAAGGGTACCTTCGGGTGCCCTTTTTTTTGTGCTATCCCATGGTTATACTCGCTCGGG TACGCCAAGGAGCACATAAA
Downstream 100 bases:
>100_bases TTACGGAAACAAACATGGCAAAAGAGATTGGCCTCAACGGCATCGAAATGCAGTATCTGAGGCTGTCACTGGGCCTCAAT CCTGCACAGGTTGGCACTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MHELIEQLQEMSEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPVTVADPHSHTYLSEVAAYAWS IGLPREMIPICQNGDNFYCIDQEGQVHYWAFGDFTEDQWDSFWEWAEDVWINS
Sequences:
>Translated_133_residues MHELIEQLQEMSEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPVTVADPHSHTYLSEVAAYAWS IGLPREMIPICQNGDNFYCIDQEGQVHYWAFGDFTEDQWDSFWEWAEDVWINS >Mature_133_residues MHELIEQLQEMSEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPVTVADPHSHTYLSEVAAYAWS IGLPREMIPICQNGDNFYCIDQEGQVHYWAFGDFTEDQWDSFWEWAEDVWINS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15284; Mature: 15284
Theoretical pI: Translated: 3.54; Mature: 3.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHELIEQLQEMSEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPV CHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCHHHHHHHCCCCCEEEECCCCE TVADPHSHTYLSEVAAYAWSIGLPREMIPICQNGDNFYCIDQEGQVHYWAFGDFTEDQWD EEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCHHHH SFWEWAEDVWINS HHHHHHHHHCCCC >Mature Secondary Structure MHELIEQLQEMSEQVPVPLELPSFDQLLDVEEAILIPLPADLKEYLLNASDVIVGSLEPV CHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCHHHHHHHCCCCCEEEECCCCE TVADPHSHTYLSEVAAYAWSIGLPREMIPICQNGDNFYCIDQEGQVHYWAFGDFTEDQWD EEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCHHHH SFWEWAEDVWINS HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA