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The map label for this gene is yedQ [H]

Identifier: 119775740

GI number: 119775740

Start: 3122925

End: 3124499

Strand: Reverse

Name: yedQ [H]

Synonym: Sama_2608

Alternate gene names: 119775740

Gene position: 3124499-3122925 (Counterclockwise)

Preceding gene: 119775741

Following gene: 119775737

Centisome position: 72.56

GC content: 50.6

Gene sequence:

>1575_bases
ATGCGGCTCAATCATTTCAATATGTTGTTGGGTACCTTGGTTACATTGGCCGCCTTTGTGACATCCTTTCTGATCCACGG
CCTTTTCATCCGACCCGGTTTGATGAGTGAAGTGCGGGATCAGCAGTTGATGGAGGTAAAAGCCCTTAAAGCGGGCATGA
ATTTTTTCAGCCAGCCGTTGTCCACCTTCAGTCATGATTATGGTGTTTGGGATGAGATGGTGGACTTTATCCAATCTCCG
GACCCCGAGTTTATCGAATCCAATCTCTACGATGATGCCTTTGTTGCCGCTGGCATGGATGGCGCCTTTTTGTTTGATAC
CAACGGTAAGCTGGTATGGGGATATCAAGGGGTGCCGGGACTGCTGCCGGATAGCCTCGACTCGCAGCCTGCATGGATTG
GTCCTGTATTGCCTGACGCCAAAACCGTGAGTACAGAGTCTGCCAGCACAAGGCGGGGCATCATCCGTTACGGTAGTCGG
GTAATGTTTTTCAGCAACAGCAATGTATTGCCAAGCAATGGCCATGGTAAGGTGATTGGCAGTTTTATGGTGGTTCGCCT
GATTAATGTCTCACTCACGGATATGCTCAAGGAATTAACCTTGGTTGAGTCCAGTCTGTCTCTTGCTAATCCCAGGCTTC
ATGGGCGCTTACCGGTACTTGAAGATCCCATCCACATCGATGAGGTCGCTCAAAGCCATCAATGGCTGGTGAAGGATGTA
TTTGGCGCGCCTGCGCTGGTGATGACAGTTCAGCATCACAAGAGTGATATCCCCTCATTTATTTCCCGAGAATCCATTTT
GATTTTTGCCACTTTCATGGTGGTGGTACTTTTAGGATCCGTGCCTCTTTCACTGTTTGTATTGACTCCCCTTGGCAATA
TCAATCGGGTGCTGGTGAAAATGACCACTCGGGGCCGACTCACCAAAATCAACCAATCCTTCTTTATCGATGAGCTGCAC
AGGTTGACTGGCTCATTTAACCAGTTGGCTGAAATGCTTGAGCGGCATCAAAACTATCTGGAATCTTTATCTTTCAAAGA
CCCGCTTACCGGCATTGCCAATCGCCGTGGCCTGGAGGCATTTGCCTCAAGGGCCCATCAGGAGTGGTTGGATGGTAAAG
GGGCGCTCGGATTTCTGATGGTGGATGTGGATGAGTTTAAGCAATATAACGATACCCAGGGCCATACAGCGGGCGATAAA
GCCCTGATCTCGGTAGCCCAGACACTGCTGATTGAGTGTCGGCGCAGGGGAGAGCTGGTCACCCGCTTTGGTGGAGAAGA
GTTTTGTGTCGTGGTTCATGGTGACGACACCCTGCAAATGGAACGTTTGGCAGAGCGGATGTTGCACCGGGTAAGGGAGC
TTGCCATTACCCATCCGTCCGGCCAATTTGGTCACGTTACTATCAGTGTCGGTGGCGTGCTCTTTGAGCACTACGATCCC
CAATTTGCCGATACATCCTGGCAGGATATGCTGGTCATGGCGGACAAGCAGTTGTATCTGGCCAAATCCGAAGGCCGTAA
TCGTGTGTGTGTGCGCGTTATGCAAGCAGCCAGATTGATGAAGACCGTAGGCTAA

Upstream 100 bases:

>100_bases
GTCAGAGTGTCGTGAGAAAGCCGCCGAAAGGCGGCTTTTTTTCGGACAAATGCCAGGTGCGGGGCTAAGCTTAAATGAAG
CTTCATCCGGGGATATTTGT

Downstream 100 bases:

>100_bases
AGCGAAGGTTTATTCTCAGGAGCCATTCGGTGAGGGCAATATGTGGTTTAGAGAGTTGCAATATCAGACAGTGTGTTTTC
TATGCACACCGTCTGATCCA

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MRLNHFNMLLGTLVTLAAFVTSFLIHGLFIRPGLMSEVRDQQLMEVKALKAGMNFFSQPLSTFSHDYGVWDEMVDFIQSP
DPEFIESNLYDDAFVAAGMDGAFLFDTNGKLVWGYQGVPGLLPDSLDSQPAWIGPVLPDAKTVSTESASTRRGIIRYGSR
VMFFSNSNVLPSNGHGKVIGSFMVVRLINVSLTDMLKELTLVESSLSLANPRLHGRLPVLEDPIHIDEVAQSHQWLVKDV
FGAPALVMTVQHHKSDIPSFISRESILIFATFMVVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRLTKINQSFFIDELH
RLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQEWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDK
ALISVAQTLLIECRRRGELVTRFGGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDP
QFADTSWQDMLVMADKQLYLAKSEGRNRVCVRVMQAARLMKTVG

Sequences:

>Translated_524_residues
MRLNHFNMLLGTLVTLAAFVTSFLIHGLFIRPGLMSEVRDQQLMEVKALKAGMNFFSQPLSTFSHDYGVWDEMVDFIQSP
DPEFIESNLYDDAFVAAGMDGAFLFDTNGKLVWGYQGVPGLLPDSLDSQPAWIGPVLPDAKTVSTESASTRRGIIRYGSR
VMFFSNSNVLPSNGHGKVIGSFMVVRLINVSLTDMLKELTLVESSLSLANPRLHGRLPVLEDPIHIDEVAQSHQWLVKDV
FGAPALVMTVQHHKSDIPSFISRESILIFATFMVVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRLTKINQSFFIDELH
RLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQEWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDK
ALISVAQTLLIECRRRGELVTRFGGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDP
QFADTSWQDMLVMADKQLYLAKSEGRNRVCVRVMQAARLMKTVG
>Mature_524_residues
MRLNHFNMLLGTLVTLAAFVTSFLIHGLFIRPGLMSEVRDQQLMEVKALKAGMNFFSQPLSTFSHDYGVWDEMVDFIQSP
DPEFIESNLYDDAFVAAGMDGAFLFDTNGKLVWGYQGVPGLLPDSLDSQPAWIGPVLPDAKTVSTESASTRRGIIRYGSR
VMFFSNSNVLPSNGHGKVIGSFMVVRLINVSLTDMLKELTLVESSLSLANPRLHGRLPVLEDPIHIDEVAQSHQWLVKDV
FGAPALVMTVQHHKSDIPSFISRESILIFATFMVVVLLGSVPLSLFVLTPLGNINRVLVKMTTRGRLTKINQSFFIDELH
RLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEAFASRAHQEWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDK
ALISVAQTLLIECRRRGELVTRFGGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDP
QFADTSWQDMLVMADKQLYLAKSEGRNRVCVRVMQAARLMKTVG

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=285, Percent_Identity=27.3684210526316, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=33.7142857142857, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=186, Percent_Identity=34.4086021505376, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=32.9545454545455, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=31.7919075144509, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=34.3373493975904, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=30.3370786516854, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=294, Percent_Identity=25.8503401360544, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=185, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788381, Length=191, Percent_Identity=29.8429319371728, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 58558; Mature: 58558

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNHFNMLLGTLVTLAAFVTSFLIHGLFIRPGLMSEVRDQQLMEVKALKAGMNFFSQPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
STFSHDYGVWDEMVDFIQSPDPEFIESNLYDDAFVAAGMDGAFLFDTNGKLVWGYQGVPG
HHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHCCCCCEEEEECCCEEEEECCCCCC
LLPDSLDSQPAWIGPVLPDAKTVSTESASTRRGIIRYGSRVMFFSNSNVLPSNGHGKVIG
CCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
SFMVVRLINVSLTDMLKELTLVESSLSLANPRLHGRLPVLEDPIHIDEVAQSHQWLVKDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FGAPALVMTVQHHKSDIPSFISRESILIFATFMVVVLLGSVPLSLFVLTPLGNINRVLVK
HCCCEEEEEEHHHHCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEE
MTTRGRLTKINQSFFIDELHRLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEA
EECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH
FASRAHQEWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDKALISVAQTLLIECRRRGELV
HHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
TRFGGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDP
HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCC
QFADTSWQDMLVMADKQLYLAKSEGRNRVCVRVMQAARLMKTVG
CCCCCCHHHHHHEECCEEEEECCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLNHFNMLLGTLVTLAAFVTSFLIHGLFIRPGLMSEVRDQQLMEVKALKAGMNFFSQPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
STFSHDYGVWDEMVDFIQSPDPEFIESNLYDDAFVAAGMDGAFLFDTNGKLVWGYQGVPG
HHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHCCCCCEEEEECCCEEEEECCCCCC
LLPDSLDSQPAWIGPVLPDAKTVSTESASTRRGIIRYGSRVMFFSNSNVLPSNGHGKVIG
CCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHH
SFMVVRLINVSLTDMLKELTLVESSLSLANPRLHGRLPVLEDPIHIDEVAQSHQWLVKDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FGAPALVMTVQHHKSDIPSFISRESILIFATFMVVVLLGSVPLSLFVLTPLGNINRVLVK
HCCCEEEEEEHHHHCCCHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEE
MTTRGRLTKINQSFFIDELHRLTGSFNQLAEMLERHQNYLESLSFKDPLTGIANRRGLEA
EECCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHH
FASRAHQEWLDGKGALGFLMVDVDEFKQYNDTQGHTAGDKALISVAQTLLIECRRRGELV
HHHHHHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
TRFGGEEFCVVVHGDDTLQMERLAERMLHRVRELAITHPSGQFGHVTISVGGVLFEHYDP
HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCC
QFADTSWQDMLVMADKQLYLAKSEGRNRVCVRVMQAARLMKTVG
CCCCCCHHHHHHEECCEEEEECCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA