| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775657
Identifier: 119775657
GI number: 119775657
Start: 3034500
End: 3034916
Strand: Direct
Name: 119775657
Synonym: Sama_2525
Alternate gene names: NA
Gene position: 3034500-3034916 (Clockwise)
Preceding gene: 119775656
Following gene: 119775680
Centisome position: 70.47
GC content: 53.24
Gene sequence:
>417_bases ATGTTTATTGGCTATCTGGTGATTGCCGCCATCATTGTTAAAACCTCTCTGATGGGGCTTGGAGGAATGTCACTGGCCAT AGCCTCCGTGGCGTATCTGCTAAACGGCCTCTGGATGCGCTCCCGCGCCCGGCCTTTAACATGCAAACAGAAAAGCGACC AGTCACAGACCAATCATCTGAGCCGCCAATTCACCCAGCTGTGTGTAACCACAGTGCTGCTGCATCTGGCGGTGTATCTG GCCTTAGTGATAAAGCTGCTGATGATGGATGGATTGGAGGATATACCGGCATTTCTGCTCAGCCACCTGGTGCTGCATCA TGTGCTGTGTGCCCTGATTGGCGGCATCATAGCCCTGATGACCATCAGGCTGTATCTCAGCCGGCACGGTTCGCCATCCT TACCCAGAATAGGTTGA
Upstream 100 bases:
>100_bases ATTTTGGGCTCACTCAAACGCTGAGGCTTCAGCCGCTTTTAAGCCAGAAGCCCTAAGCTGCTGTGCTTTGGCATAGGACT TTGAATATTGAGTATTTCCG
Downstream 100 bases:
>100_bases GATAAAAGAATAAAAGCGCCCAGTGGCGCTTTTATCATAATAAGACAGAGTTGCTTGCAGAGTGTGAGTTGCGGGTGGCT CAGCTCTGCTGGCGATACCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MFIGYLVIAAIIVKTSLMGLGGMSLAIASVAYLLNGLWMRSRARPLTCKQKSDQSQTNHLSRQFTQLCVTTVLLHLAVYL ALVIKLLMMDGLEDIPAFLLSHLVLHHVLCALIGGIIALMTIRLYLSRHGSPSLPRIG
Sequences:
>Translated_138_residues MFIGYLVIAAIIVKTSLMGLGGMSLAIASVAYLLNGLWMRSRARPLTCKQKSDQSQTNHLSRQFTQLCVTTVLLHLAVYL ALVIKLLMMDGLEDIPAFLLSHLVLHHVLCALIGGIIALMTIRLYLSRHGSPSLPRIG >Mature_138_residues MFIGYLVIAAIIVKTSLMGLGGMSLAIASVAYLLNGLWMRSRARPLTCKQKSDQSQTNHLSRQFTQLCVTTVLLHLAVYL ALVIKLLMMDGLEDIPAFLLSHLVLHHVLCALIGGIIALMTIRLYLSRHGSPSLPRIG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15124; Mature: 15124
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIGYLVIAAIIVKTSLMGLGGMSLAIASVAYLLNGLWMRSRARPLTCKQKSDQSQTNHL CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH SRQFTQLCVTTVLLHLAVYLALVIKLLMMDGLEDIPAFLLSHLVLHHVLCALIGGIIALM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIRLYLSRHGSPSLPRIG HHHHHHHHCCCCCCCCCC >Mature Secondary Structure MFIGYLVIAAIIVKTSLMGLGGMSLAIASVAYLLNGLWMRSRARPLTCKQKSDQSQTNHL CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH SRQFTQLCVTTVLLHLAVYLALVIKLLMMDGLEDIPAFLLSHLVLHHVLCALIGGIIALM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TIRLYLSRHGSPSLPRIG HHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA