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The map label for this gene is secD [H]

Identifier: 119775631

GI number: 119775631

Start: 3000542

End: 3002377

Strand: Reverse

Name: secD [H]

Synonym: Sama_2499

Alternate gene names: 119775631

Gene position: 3002377-3000542 (Counterclockwise)

Preceding gene: 119775632

Following gene: 119775630

Centisome position: 69.72

GC content: 57.52

Gene sequence:

>1836_bases
ATGTTGACCGATCAACTGCTTCACCGCGGACGGCGTGGCAACGCCTCCAAAACCCTAAACCGTACTTCCCCCTGGCTGGC
GCTGACCTTTTCGGTGGCGCTGATACTGCTGGCGCTGTCGGCACTGCCGAGCTTTTTTGGAGAAAGGGCGGCTCTGACTC
TGGGTAAGGATGCCTGGATTGCACCAGAGCAGGCTGGGCAAATCCTAACCGAAGCCCATATCGGCGTAGCCGCCATCAGC
GCCCGGGACAAGGGCATTCAGATCATCCTCAGCGATGAAAATCAGCAGATGGCGGCGCGCCAGTTATTGGCAGAAGCAGC
CCAGAACCCTGCCGCTATTACGCTGTCCATGGTACCGGCGGCGCCCCCTTGGCTTAATCGATTGGGCCTGTCTCCCATCA
AGCTGGGGCTGGACCTGCGCGGTGGGGTGCAATTTTTAATGCAGGTCGACACGGCGCCTGTATTCAAGGCACAGGGCGAA
GCCCTGAAAGGGGCGATTCGCCAGGTAATAAGAGACAAGGGACTGAGGTCAGTTGCCGTGCTGAAAGATGAAAGCAGACT
GACTGAAAATCCCGACGCCCTCAAGTTATCCGGCGCCACCCAAAGTCTTGCTGAACTCAGAGGCTGGCTGTTACTGAATT
ACCCACAGTGGCAGAGCGAGTCTGCCGACGGCGCGATACTGTTACGCCTGAAGGATACAGAGCGTGTGGCTCTGGTGTCG
CAAACCCTTAAAGAAAATATCAGCATCATGCGTGGTCGTATTCAGGAGCTTGGGATCACTGAGGCTATCGTGCAGCGCCA
CGGAGAAAGCCGGATTCTGGTGGAGTTGCCCGGCGTGCAGGACCCGGTTGCAGCCAAACGGGTCATAGGTGCTACGGCAA
GCTTATCGTTTCATGAGCTCAAAGAGGGGGGCACTGCGCTGCAAACGCCCTTTGGCGACGGTCGAGTGGGGCTTAATCCT
GCGCCGGTTCTCGGCGGTGAGCACATAGTTGACGCCCGGTCTGGCAGTGATGAAATGGGGCGCCCTGCGGTGAATATTGT
GCTGGATACCGAGGGTGGCAAACGCATGTCTGACTTTTCCCGCGGCCATATCGGTGAGCCCATGGCGACCCGTTACAGCG
AGTACCGCGCCAGCGCCGAGGGCACGGTCAAAGACAGTCGGGTAATTTCAGTCGCTACCATTAATAGCCAACTGGGTAAT
CGTTTCTCCATTACCGGGCTTGGCAGCCATGAGGAGGCGCAGGAGCTCGCGATGCTGTTGCGGGCAGGTTCGATGACGGC
CCCGGTCACCATTCAAAAGGAGCGCACCATAGGCCCAAGCCTTGGGGCCGAGAATATTCACAACGGCTTTGCTGCATTGG
CGTTGGGTATGGGGGCAACTCTGCTGTTTATGGCGCTCTGGTATCGCCGCCTTGGCTGGGTGGCCAACGTGGCGCTGCTG
GCCAATCTGGTGATGCTGCTTGGCCTGCTGGCGCTTATTCCCGGCGCAGTGCTCACCTTGCCGGGCATTGCGGGTTTGGT
GCTTACCGTCGGCATGGCGGTGGATACCAACGTCCTGATTTTTGAGCGTATCCGCGACAAAATGAAGGAGGGCAGAAGCC
TTGCTCTTGCCATAGACAAGGGCTTTGCCAGTGCCTTTGGCACCATAGTGGATGCCAACCTTACCACCATGATCACAGCT
CTGGTGCTGTACGCCATCGGTAACGGGCCCATTCAGGGATTTGCTCTGACGCTGGGGCTTGGGCTTGTCACCTCAATGAT
CACAGGGATTTTTATGTCACGGCTCATCATTAATTGGGTTTATGGCCGTGATGAGCGTAAGGCTGTGAGGATTTAA

Upstream 100 bases:

>100_bases
CCAAAGCCGCGACCTTTCTCTTCCCGATATGGCCTGAGCGCCATCAGTGGTTCGCCCAACAGGGGCGGACCTTACCTGAG
CTTTTCCGGAAGAGAATATT

Downstream 100 bases:

>100_bases
CCATGAAAACATTGAACTTTACTCGCTTCAGACACCTGATGACCCTGATTTCCGTCGTTGCCTTGCTGCTGTCGGTGCTG
GCGATAAGCACCCGGGGCTT

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MLTDQLLHRGRRGNASKTLNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWIAPEQAGQILTEAHIGVAAIS
ARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPAAPPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGE
ALKGAIRQVIRDKGLRSVAVLKDESRLTENPDALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTERVALVS
QTLKENISIMRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHELKEGGTALQTPFGDGRVGLNP
APVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFSRGHIGEPMATRYSEYRASAEGTVKDSRVISVATINSQLGN
RFSITGLGSHEEAQELAMLLRAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYRRLGWVANVALL
ANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKEGRSLALAIDKGFASAFGTIVDANLTTMITA
LVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWVYGRDERKAVRI

Sequences:

>Translated_611_residues
MLTDQLLHRGRRGNASKTLNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWIAPEQAGQILTEAHIGVAAIS
ARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPAAPPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGE
ALKGAIRQVIRDKGLRSVAVLKDESRLTENPDALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTERVALVS
QTLKENISIMRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHELKEGGTALQTPFGDGRVGLNP
APVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFSRGHIGEPMATRYSEYRASAEGTVKDSRVISVATINSQLGN
RFSITGLGSHEEAQELAMLLRAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYRRLGWVANVALL
ANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKEGRSLALAIDKGFASAFGTIVDANLTTMITA
LVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWVYGRDERKAVRI
>Mature_611_residues
MLTDQLLHRGRRGNASKTLNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWIAPEQAGQILTEAHIGVAAIS
ARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPAAPPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGE
ALKGAIRQVIRDKGLRSVAVLKDESRLTENPDALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTERVALVS
QTLKENISIMRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHELKEGGTALQTPFGDGRVGLNP
APVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFSRGHIGEPMATRYSEYRASAEGTVKDSRVISVATINSQLGN
RFSITGLGSHEEAQELAMLLRAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYRRLGWVANVALL
ANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKEGRSLALAIDKGFASAFGTIVDANLTTMITA
LVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWVYGRDERKAVRI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=621, Percent_Identity=38.4863123993559, Blast_Score=416, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65319; Mature: 65319

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDQLLHRGRRGNASKTLNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWI
CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
APEQAGQILTEAHIGVAAISARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPA
CHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
APPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGEALKGAIRQVIRDKGLRSVAV
CCHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEE
LKDESRLTENPDALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTERVALVS
EECCHHCCCCCCCEEECCCHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHH
QTLKENISIMRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHEL
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCHHHHH
KEGGTALQTPFGDGRVGLNPAPVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFS
HCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCC
RGHIGEPMATRYSEYRASAEGTVKDSRVISVATINSQLGNRFSITGLGSHEEAQELAMLL
CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHCCEEEEEECCCHHHHHHHHHHH
RAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYRRLGWVANVALL
HCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKEGRSLALAIDK
HHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEC
GFASAFGTIVDANLTTMITALVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWV
CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGRDERKAVRI
CCCCCCCCCCC
>Mature Secondary Structure
MLTDQLLHRGRRGNASKTLNRTSPWLALTFSVALILLALSALPSFFGERAALTLGKDAWI
CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
APEQAGQILTEAHIGVAAISARDKGIQIILSDENQQMAARQLLAEAAQNPAAITLSMVPA
CHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
APPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGEALKGAIRQVIRDKGLRSVAV
CCHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEE
LKDESRLTENPDALKLSGATQSLAELRGWLLLNYPQWQSESADGAILLRLKDTERVALVS
EECCHHCCCCCCCEEECCCHHHHHHHCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHHH
QTLKENISIMRGRIQELGITEAIVQRHGESRILVELPGVQDPVAAKRVIGATASLSFHEL
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCHHHHH
KEGGTALQTPFGDGRVGLNPAPVLGGEHIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFS
HCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCHHHCC
RGHIGEPMATRYSEYRASAEGTVKDSRVISVATINSQLGNRFSITGLGSHEEAQELAMLL
CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECHHHCCEEEEEECCCHHHHHHHHHHH
RAGSMTAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYRRLGWVANVALL
HCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANLVMLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKEGRSLALAIDK
HHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEC
GFASAFGTIVDANLTTMITALVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWV
CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGRDERKAVRI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]