| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yggX [C]
Identifier: 119775624
GI number: 119775624
Start: 2993425
End: 2993700
Strand: Direct
Name: yggX [C]
Synonym: Sama_2491
Alternate gene names: 119775624
Gene position: 2993425-2993700 (Clockwise)
Preceding gene: 119775623
Following gene: 119775627
Centisome position: 69.52
GC content: 48.55
Gene sequence:
>276_bases ATGGCCCGTACCGTTCAGTGTGTGTATTTGGGTAAAGAAGCCGAAGGTCTGGATTTCCAGCTCTATCCCGGCGAGCTCGG CAAGCGCATTTTCGACACCATCAGCAAAGAAGCCTGGGGCGAGTGGCAGAAAAAGCAGACCATGCTTATCAATGAGAAAA AATTGAACATGATGAACATGGACCATCGCAAACTGCTCGAAGAGCAAATGCAGCTATTCCTGTTCGAAGGCAAGGATGTG CAGATTGAAGGTTACGTTCCACCGAAACCTGAATGA
Upstream 100 bases:
>100_bases TCTTGGGCTTGCCGCCGCCACCGAGCGAATTCTGGCAAGCCTTGTAAGCGAACTTAAGCAAGAATCCGGCGGCAGCGCTG CCGCCCACAAGGAGTAAAAC
Downstream 100 bases:
>100_bases TGCAAGGATAAATCGCTAACATCCTTCATGATGCCATCACCGCTATGGTGTCACTCGAATAAGGCCCCTCGCGGGCCTTT TAGTTATCTGCGATAGCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 91; Mature: 90
Protein sequence:
>91_residues MARTVQCVYLGKEAEGLDFQLYPGELGKRIFDTISKEAWGEWQKKQTMLINEKKLNMMNMDHRKLLEEQMQLFLFEGKDV QIEGYVPPKPE
Sequences:
>Translated_91_residues MARTVQCVYLGKEAEGLDFQLYPGELGKRIFDTISKEAWGEWQKKQTMLINEKKLNMMNMDHRKLLEEQMQLFLFEGKDV QIEGYVPPKPE >Mature_90_residues ARTVQCVYLGKEAEGLDFQLYPGELGKRIFDTISKEAWGEWQKKQTMLINEKKLNMMNMDHRKLLEEQMQLFLFEGKDVQ IEGYVPPKPE
Specific function: Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes
COG id: COG2924
COG function: function code CO; Fe-S cluster protector protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fe(2+)-trafficking protein family
Homologues:
Organism=Escherichia coli, GI1789332, Length=87, Percent_Identity=73.5632183908046, Blast_Score=139, Evalue=3e-35,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): FETP_SHEAM (A1S8I8)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928364.1 - ProteinModelPortal: A1S8I8 - SMR: A1S8I8 - STRING: A1S8I8 - GeneID: 4604739 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2491 - NMPDR: fig|326297.7.peg.2332 - eggNOG: COG2924 - HOGENOM: HBG289800 - OMA: SKQTMLI - PhylomeDB: A1S8I8 - ProtClustDB: PRK05408 - HAMAP: MF_00686 - InterPro: IPR007457 - PIRSF: PIRSF029827 - ProDom: PD029191
Pfam domain/function: PF04362 Iron_traffic; SSF111148 Fe_traffick_prot_YggX
EC number: NA
Molecular weight: Translated: 10739; Mature: 10607
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTVQCVYLGKEAEGLDFQLYPGELGKRIFDTISKEAWGEWQKKQTMLINEKKLNMMNM CCCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCEEEECCCCCCCCCC DHRKLLEEQMQLFLFEGKDVQIEGYVPPKPE CHHHHHHHHHHEEEECCCCEEEECCCCCCCC >Mature Secondary Structure ARTVQCVYLGKEAEGLDFQLYPGELGKRIFDTISKEAWGEWQKKQTMLINEKKLNMMNM CCEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHCCHHCCCEEEECCCCCCCCCC DHRKLLEEQMQLFLFEGKDVQIEGYVPPKPE CHHHHHHHHHHEEEECCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA