| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yicG [H]
Identifier: 119775597
GI number: 119775597
Start: 2970453
End: 2971064
Strand: Direct
Name: yicG [H]
Synonym: Sama_2463
Alternate gene names: 119775597
Gene position: 2970453-2971064 (Clockwise)
Preceding gene: 119775594
Following gene: 119775603
Centisome position: 68.98
GC content: 56.86
Gene sequence:
>612_bases ATGCTGCTGTGGCTCATCGGTATACTGGCCGAAGCCATGACAGGCGCCCTCGCCGCCGGACGCAAACAGATGGATCTCTT TGGGGTGGTGATCATTGGGCTGGTGACCGCCATCGGCGGCGGCACCCTGAGGGATATGCTCCTTGGCAACTATCCGTTGA TTTGGATTGCCAACTGGCACTATCTGATTGCCATTGCCGCAGCCTCGCTGCTAACGGTACTTATCGCCCCACTGATGCGC TATCTTGGCCGTTTATTCCTGGCCATTGATGCCCTTGGTCTGGCGGTGTTTTCCATTACCGGTGCCCAAAAAACCCTGAT GCTGGGCTACAGCCCCGTGGTCGCTGTGGCCATGGGGGTGGTGACCGGCGTCTTTGGCGGTGTGCTCAGAGACATTTTGT GCAATGAGATCCCGCTGATTTTCAGACGGGAATTTTATGCGCTGGCATCCTTACTTACCGCCAGCCTTTATGTGCTGCTG GCCCTCAGTGGTTTTGGCGGCTGGCCAAGCCTGCTGGGCTGCTTGCTGCTGGGATTCGGGCTGCGTATGTGTGCCATCCG TTACCACTGGTCGATGCCAACCTTTAACTATCAGAGTGATGCTCACCACTGA
Upstream 100 bases:
>100_bases ATACTTCCAGAAAGTTAATCTTGATTGAAAAGGCCAATAATTAAGGCAGAATGCCGTTTTTATCCAAGAGATACCTTAAT TGGAACAAACAGAATTTATT
Downstream 100 bases:
>100_bases GTCCAACATAAAAAACGCCGGCTTTGCCGGCGTTTTCGTTATTGCTGACTGATGTCTTTCAAGGCCGCCAGGGCCGCATC ATAGTCCGGATGATGACTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH
Sequences:
>Translated_203_residues MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH >Mature_203_residues MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=201, Percent_Identity=50.7462686567164, Blast_Score=196, Evalue=6e-52, Organism=Escherichia coli, GI1786352, Length=206, Percent_Identity=37.8640776699029, Blast_Score=109, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 21891; Mature: 21891
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWH CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECHH YLIAIAAASLLTVLIAPLMRYLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH VTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLLALSGFGGWPSLLGCLLLGFG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LRMCAIRYHWSMPTFNYQSDAHH HHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWH CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECHH YLIAIAAASLLTVLIAPLMRYLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH VTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLLALSGFGGWPSLLGCLLLGFG HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH LRMCAIRYHWSMPTFNYQSDAHH HHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]