Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is yicG [H]

Identifier: 119775597

GI number: 119775597

Start: 2970453

End: 2971064

Strand: Direct

Name: yicG [H]

Synonym: Sama_2463

Alternate gene names: 119775597

Gene position: 2970453-2971064 (Clockwise)

Preceding gene: 119775594

Following gene: 119775603

Centisome position: 68.98

GC content: 56.86

Gene sequence:

>612_bases
ATGCTGCTGTGGCTCATCGGTATACTGGCCGAAGCCATGACAGGCGCCCTCGCCGCCGGACGCAAACAGATGGATCTCTT
TGGGGTGGTGATCATTGGGCTGGTGACCGCCATCGGCGGCGGCACCCTGAGGGATATGCTCCTTGGCAACTATCCGTTGA
TTTGGATTGCCAACTGGCACTATCTGATTGCCATTGCCGCAGCCTCGCTGCTAACGGTACTTATCGCCCCACTGATGCGC
TATCTTGGCCGTTTATTCCTGGCCATTGATGCCCTTGGTCTGGCGGTGTTTTCCATTACCGGTGCCCAAAAAACCCTGAT
GCTGGGCTACAGCCCCGTGGTCGCTGTGGCCATGGGGGTGGTGACCGGCGTCTTTGGCGGTGTGCTCAGAGACATTTTGT
GCAATGAGATCCCGCTGATTTTCAGACGGGAATTTTATGCGCTGGCATCCTTACTTACCGCCAGCCTTTATGTGCTGCTG
GCCCTCAGTGGTTTTGGCGGCTGGCCAAGCCTGCTGGGCTGCTTGCTGCTGGGATTCGGGCTGCGTATGTGTGCCATCCG
TTACCACTGGTCGATGCCAACCTTTAACTATCAGAGTGATGCTCACCACTGA

Upstream 100 bases:

>100_bases
ATACTTCCAGAAAGTTAATCTTGATTGAAAAGGCCAATAATTAAGGCAGAATGCCGTTTTTATCCAAGAGATACCTTAAT
TGGAACAAACAGAATTTATT

Downstream 100 bases:

>100_bases
GTCCAACATAAAAAACGCCGGCTTTGCCGGCGTTTTCGTTATTGCTGACTGATGTCTTTCAAGGCCGCCAGGGCCGCATC
ATAGTCCGGATGATGACTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR
YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL
ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH

Sequences:

>Translated_203_residues
MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR
YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL
ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH
>Mature_203_residues
MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWHYLIAIAAASLLTVLIAPLMR
YLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGVVTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLL
ALSGFGGWPSLLGCLLLGFGLRMCAIRYHWSMPTFNYQSDAHH

Specific function: Unknown

COG id: COG2860

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0126 family [H]

Homologues:

Organism=Escherichia coli, GI87082304, Length=201, Percent_Identity=50.7462686567164, Blast_Score=196, Evalue=6e-52,
Organism=Escherichia coli, GI1786352, Length=206, Percent_Identity=37.8640776699029, Blast_Score=109, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005115 [H]

Pfam domain/function: PF03458 UPF0126 [H]

EC number: NA

Molecular weight: Translated: 21891; Mature: 21891

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWH
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECHH
YLIAIAAASLLTVLIAPLMRYLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
VTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLLALSGFGGWPSLLGCLLLGFG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LRMCAIRYHWSMPTFNYQSDAHH
HHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLWLIGILAEAMTGALAAGRKQMDLFGVVIIGLVTAIGGGTLRDMLLGNYPLIWIANWH
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECHH
YLIAIAAASLLTVLIAPLMRYLGRLFLAIDALGLAVFSITGAQKTLMLGYSPVVAVAMGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH
VTGVFGGVLRDILCNEIPLIFRREFYALASLLTASLYVLLALSGFGGWPSLLGCLLLGFG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LRMCAIRYHWSMPTFNYQSDAHH
HHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]