| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775536
Identifier: 119775536
GI number: 119775536
Start: 2886367
End: 2886735
Strand: Direct
Name: 119775536
Synonym: Sama_2402
Alternate gene names: NA
Gene position: 2886367-2886735 (Clockwise)
Preceding gene: 119775535
Following gene: 119775537
Centisome position: 67.03
GC content: 56.64
Gene sequence:
>369_bases ATGAAAACCCTGATTTTATCCCTGCTGGCACTGAGTTTTGTCGCATCCCCCTTACACGCAGGGGAGCTCTACAAGGTAAT GGGCAAGCGTGAAGGTCGCAGCAACCACAGCGTTATGTACGATGAAAAAGACTGCAAAACCTGCCACCTGGGCAGCCCCA AAGGGCCTGCCACTGAAGCGGCCTGTATTGACTGCCATGGCAGCTACGATGAGATGGCCGCATCCACCCGGGACCAGGCA CCCAACCCCCACGATGCTCCGCACTGGGGCGCGGACGTGCCCTGCACCGTGTGCCACAGCGAGCATCAGCCAGCCAAGGT GCTCTGTAACGATTGCCACCAGTTTGCCTTTCCAAACTTTTCAAAATAA
Upstream 100 bases:
>100_bases CTGTTCGGCCGAATTCGATTAACTGCCTGCTCCTGCCCCGATGCGTTCGCATTTGGGGTGATTGCCGGTGAACAGGTGGC CAAGGCCTGAGGAGACACAC
Downstream 100 bases:
>100_bases TCCGGAGTAACCTATGAGTGTTTTTCGCCTCTCCCTGTTAAGCGCTTCACTGTTGGCAGGAGTCAGCCTGCACGCGCAGG CCACACCAGACTTTTATGGC
Product: tetraheme cytochrome c
Products: NA
Alternate protein names: Cytochrome C; Fumarate Reductase Flavoprotein Subunit
Number of amino acids: Translated: 122; Mature: 122
Protein sequence:
>122_residues MKTLILSLLALSFVASPLHAGELYKVMGKREGRSNHSVMYDEKDCKTCHLGSPKGPATEAACIDCHGSYDEMAASTRDQA PNPHDAPHWGADVPCTVCHSEHQPAKVLCNDCHQFAFPNFSK
Sequences:
>Translated_122_residues MKTLILSLLALSFVASPLHAGELYKVMGKREGRSNHSVMYDEKDCKTCHLGSPKGPATEAACIDCHGSYDEMAASTRDQA PNPHDAPHWGADVPCTVCHSEHQPAKVLCNDCHQFAFPNFSK >Mature_122_residues MKTLILSLLALSFVASPLHAGELYKVMGKREGRSNHSVMYDEKDCKTCHLGSPKGPATEAACIDCHGSYDEMAASTRDQA PNPHDAPHWGADVPCTVCHSEHQPAKVLCNDCHQFAFPNFSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13310; Mature: 13310
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 9.8 %Cys+Met (Translated Protein) 6.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 9.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLILSLLALSFVASPLHAGELYKVMGKREGRSNHSVMYDEKDCKTCHLGSPKGPATEA CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCCCCC ACIDCHGSYDEMAASTRDQAPNPHDAPHWGADVPCTVCHSEHQPAKVLCNDCHQFAFPNF EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCC SK CC >Mature Secondary Structure MKTLILSLLALSFVASPLHAGELYKVMGKREGRSNHSVMYDEKDCKTCHLGSPKGPATEA CHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCEEECCCCCCCCCCC ACIDCHGSYDEMAASTRDQAPNPHDAPHWGADVPCTVCHSEHQPAKVLCNDCHQFAFPNF EEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCC SK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA