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The map label for this gene is rodZ [H]

Identifier: 119775500

GI number: 119775500

Start: 2843218

End: 2844240

Strand: Reverse

Name: rodZ [H]

Synonym: Sama_2366

Alternate gene names: 119775500

Gene position: 2844240-2843218 (Counterclockwise)

Preceding gene: 119775501

Following gene: 119775499

Centisome position: 66.05

GC content: 54.74

Gene sequence:

>1023_bases
ATGAATGAAGAATTAACGCCTTCTTCCGAAGAGCAGGAAGCGCCAGCGACAGAATCGTTGGGGCAAATCCTCAAGGCCGC
CCGCGAAGCCAAGGGGATGTCGGTCGCCGATGTGGCGACTGCGTTGCATTTGCGGCCCTCCGTTGTAAAAGATCTCGAAG
CCGACGACTTCAGCAATATCTCATCAGCCACTTATATCCGCGGATACATCAAAAACTTTGCCCGCATTGTTGAAGCCGAT
AAGCAGAAGGTGGAGGCCTGTCTGGCAAGCCAGGTACCCGGTGTCAGCCAACCGGCCATGCAAAGCTTTTCCAGAAAAAC
CGTGCGTCAGGCCAGAGATAAGCGCTACCTGATGCTCACCTATCTGGTGATCCTCATCCTGGTTGCCTTATTGGTATTCT
GGTGGCTACAAACCAGTAAGTTTTTTAATACCGCTGCCGTCGATTTCTCCAAGCCCACAGCCGAAGAAGTAGCGGCCGCC
GGACAAACCTCTATTCAGGATGACCTGATGCAGCGACTGGGCAATGAGACCCACACGCAAGCAGGTACCTCCCCGCAGCC
AGACACTGAGGCGGCTTATGAGCAGTCTGTAAATAGTGATGATATGCCGGTTGCCGCGCAAGAGGTCACAGTGGGCAGCG
CTGAAGAGCCTTCGGCGCAGCAGGACAACAATTCTGCCGTCGACACCACCGCCTCTGATATGAGAGAAATTGACACCAGA
GCAAGCAACGCAGAAGCTACACCAGAGGTTACTGCCAGTATTCCGGCCACACCAGGACAGTCTGCTCTGGTCATGTCCTT
CAGTGCCGACTGCTGGGTTCAGGTAAAGGATGCCACAGGTAAGGTACTTGTCAGTGATCTGCGTAAGGCCGGTCAGACCA
TCAACCTCAGTGGCAAGGCGCCTTTCAGCTTTATTCTCGGCGCCCCCCAGGCTGTTAAGCTCAGTATCAATGGTGAGGCC
GCGAGTCTCGACGAGTTCCCCAAGGGCCGGGTGGCCAGATTCAGTCTGCCCAAAAACGGTTAA

Upstream 100 bases:

>100_bases
AACTGAATAATCGAGATGCCAGCAGCCGATATGGCATTATGCTGTTGGCGAAATTTCCCGCTTCACCAGAAGCCAAAGAA
TATCGGGCCAGTTTGAATCA

Downstream 100 bases:

>100_bases
GCGCAACAGCGTGAGAAGTATTTGACCATGTTCAACGAAAATCCCATCAAGCGTCGCCCCTCTACCCGCATTTACGTCGG
TAATGTGCCTATTGGTGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNEELTPSSEEQEAPATESLGQILKAAREAKGMSVADVATALHLRPSVVKDLEADDFSNISSATYIRGYIKNFARIVEAD
KQKVEACLASQVPGVSQPAMQSFSRKTVRQARDKRYLMLTYLVILILVALLVFWWLQTSKFFNTAAVDFSKPTAEEVAAA
GQTSIQDDLMQRLGNETHTQAGTSPQPDTEAAYEQSVNSDDMPVAAQEVTVGSAEEPSAQQDNNSAVDTTASDMREIDTR
ASNAEATPEVTASIPATPGQSALVMSFSADCWVQVKDATGKVLVSDLRKAGQTINLSGKAPFSFILGAPQAVKLSINGEA
ASLDEFPKGRVARFSLPKNG

Sequences:

>Translated_340_residues
MNEELTPSSEEQEAPATESLGQILKAAREAKGMSVADVATALHLRPSVVKDLEADDFSNISSATYIRGYIKNFARIVEAD
KQKVEACLASQVPGVSQPAMQSFSRKTVRQARDKRYLMLTYLVILILVALLVFWWLQTSKFFNTAAVDFSKPTAEEVAAA
GQTSIQDDLMQRLGNETHTQAGTSPQPDTEAAYEQSVNSDDMPVAAQEVTVGSAEEPSAQQDNNSAVDTTASDMREIDTR
ASNAEATPEVTASIPATPGQSALVMSFSADCWVQVKDATGKVLVSDLRKAGQTINLSGKAPFSFILGAPQAVKLSINGEA
ASLDEFPKGRVARFSLPKNG
>Mature_340_residues
MNEELTPSSEEQEAPATESLGQILKAAREAKGMSVADVATALHLRPSVVKDLEADDFSNISSATYIRGYIKNFARIVEAD
KQKVEACLASQVPGVSQPAMQSFSRKTVRQARDKRYLMLTYLVILILVALLVFWWLQTSKFFNTAAVDFSKPTAEEVAAA
GQTSIQDDLMQRLGNETHTQAGTSPQPDTEAAYEQSVNSDDMPVAAQEVTVGSAEEPSAQQDNNSAVDTTASDMREIDTR
ASNAEATPEVTASIPATPGQSALVMSFSADCWVQVKDATGKVLVSDLRKAGQTINLSGKAPFSFILGAPQAVKLSINGEA
ASLDEFPKGRVARFSLPKNG

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=347, Percent_Identity=30.2593659942363, Blast_Score=127, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 36466; Mature: 36466

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEELTPSSEEQEAPATESLGQILKAAREAKGMSVADVATALHLRPSVVKDLEADDFSNI
CCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCCCCCC
SSATYIRGYIKNFARIVEADKQKVEACLASQVPGVSQPAMQSFSRKTVRQARDKRYLMLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
YLVILILVALLVFWWLQTSKFFNTAAVDFSKPTAEEVAAAGQTSIQDDLMQRLGNETHTQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCC
AGTSPQPDTEAAYEQSVNSDDMPVAAQEVTVGSAEEPSAQQDNNSAVDTTASDMREIDTR
CCCCCCCCHHHHHHHCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ASNAEATPEVTASIPATPGQSALVMSFSADCWVQVKDATGKVLVSDLRKAGQTINLSGKA
CCCCCCCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCCCEEEECCCC
PFSFILGAPQAVKLSINGEAASLDEFPKGRVARFSLPKNG
CHHHEECCCCEEEEEECCCCCCHHHCCCCCEEEECCCCCC
>Mature Secondary Structure
MNEELTPSSEEQEAPATESLGQILKAAREAKGMSVADVATALHLRPSVVKDLEADDFSNI
CCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCCCCCCCC
SSATYIRGYIKNFARIVEADKQKVEACLASQVPGVSQPAMQSFSRKTVRQARDKRYLMLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
YLVILILVALLVFWWLQTSKFFNTAAVDFSKPTAEEVAAAGQTSIQDDLMQRLGNETHTQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCC
AGTSPQPDTEAAYEQSVNSDDMPVAAQEVTVGSAEEPSAQQDNNSAVDTTASDMREIDTR
CCCCCCCCHHHHHHHCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ASNAEATPEVTASIPATPGQSALVMSFSADCWVQVKDATGKVLVSDLRKAGQTINLSGKA
CCCCCCCCCEEEECCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCCCEEEECCCC
PFSFILGAPQAVKLSINGEAASLDEFPKGRVARFSLPKNG
CHHHEECCCCEEEEEECCCCCCHHHCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA