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The map label for this gene is ntrC [H]

Identifier: 119775436

GI number: 119775436

Start: 2766698

End: 2768128

Strand: Reverse

Name: ntrC [H]

Synonym: Sama_2301

Alternate gene names: 119775436

Gene position: 2768128-2766698 (Counterclockwise)

Preceding gene: 119775437

Following gene: 119775435

Centisome position: 64.28

GC content: 50.94

Gene sequence:

>1431_bases
ATGATGCAGACAGACCAGAGAATTTTGCTTGTAGGAAACCAGACCGAACGTATCGGTCGTCTTTCCTGCATTCTTGAGTT
TTTAGGTGAACAACTAGAGACCCTGGACCCAAGTGGTCTGGAACAAGCCGTCAAGGAAACCCGTTTTCGGGCACTGATTG
TTGACCTTGAATCCCTGCCTTTGGAGCAGGTAAAAGTGTTTGCTACCAAAATACCTTGGCAGCCAATTTTACTGCTTGGC
GCAACTGATGATCTCAGCGCAAATCTCATCGGTAGCGTTGAAGAGCCGTTCAATTATCCCCAACTCACCGAATTGCTGCA
CTTCTGTCAGGTCTTTGGCCAGCAGAGGCGTCCGGACGTGCCTACCAGCGGTAACCAGACCAAGTTATTCCGCAGCCTCG
TTGGTCGCAGTGAAGGCATAGTCAACGTGCGTCATCTTATCAGTCAGGTTGCGCCATCGGATGCGACTGTGTTGGTGCTG
GGGCAGTCTGGTACTGGCAAGGAAGTGGTTGCTCGCAATATTCACTACCTGTCGGAGCGTCGCGACGGTCCTTTTATTCC
TGTCAATTGTGGTGCCATTCCGCCTGAACTGCTTGAGAGTGAACTCTTTGGTCATGAGAAGGGCTCTTTTACCGGAGCAA
TCAGCTCCCGTAAAGGCCGTTTTGAGCTGGCTGAAGGTGGTACCCTGTTTCTGGATGAAATTGGTGATATGCCCCTGGCC
ATGCAGGTAAAACTGCTACGTGTGTTGCAGGAGCGCGTATTTGAACGCGTTGGTGGCAGCAAACCCATTCAAGCCAATGT
CCGTGTGGTGGCAGCGACCCACAGAAACCTTGAGAACATGATAGAAAATAATGAGTTCCGTGAGGATCTTTTCTATCGTC
TCAATGTGTTCCCCATAGAAATGCCGTCGCTGTCTGAGCGCTGTGAAGATATTCCGCTGCTACTTCAGGAGCTTGTCAGC
CGGGTCTTTAACGAAGGCCGTGGTAAAGTGCGTTTCACCCAACGCGCCATTGAGTCTCTCAAGGAACATGACTGGTCCGG
CAACGTACGTGAACTCTCCAACCTGGTTGAGCGACTCACTATCCTGTATCCGGGCGGTTTGGTTGATGTGAACGATCTAC
CCGTTAAATATCGCCACATCGACGTCCCCGAGTACTGTGTCGAAGTCAGTGAAGAGATGTTGGAGCGCGATGCGCTGGCG
TCTATCTTTAATGATGATGAGCCGGTGGAAATTCCGGAAACCCGCTTCCCCAGCGAATTGCCTCCGGAAGGGGTAAATCT
TAAAGATTTGTTGGCCGAGCTTGAAATCGACATGATACGTCAGGCGTTGGAGCAACAGGATAACGTCGTTGCCCGCGCAG
CTGAAATGCTCGGGATCCGCAGAACCACTCTGGTTGAAAAAATGCGTAAGTACGGGATGAGTAAAGATTAA

Upstream 100 bases:

>100_bases
ACCGGCAGTTTTCCCGGAGTAACAGCATTGACGCCCTGTGAGCAACGAACACCAATAATTAATGCGATTCGTTAGATATT
CGAGCGTTACGGCCAACTGA

Downstream 100 bases:

>100_bases
TTTTACTCAGGTCCCACCCAATTCTCTAAATTTCTACTCTGGCACAGTCCCTGCATTAACCCCGTCAATAACGTAATTTT
GACGGGGTTTCCATGGCCAC

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MMQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLPLEQVKVFATKIPWQPILLLG
ATDDLSANLIGSVEEPFNYPQLTELLHFCQVFGQQRRPDVPTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVL
GQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLA
MQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIEMPSLSERCEDIPLLLQELVS
RVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALA
SIFNDDEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD

Sequences:

>Translated_476_residues
MMQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLPLEQVKVFATKIPWQPILLLG
ATDDLSANLIGSVEEPFNYPQLTELLHFCQVFGQQRRPDVPTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVL
GQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLA
MQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIEMPSLSERCEDIPLLLQELVS
RVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALA
SIFNDDEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD
>Mature_476_residues
MMQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLPLEQVKVFATKIPWQPILLLG
ATDDLSANLIGSVEEPFNYPQLTELLHFCQVFGQQRRPDVPTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVL
GQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLA
MQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIEMPSLSERCEDIPLLLQELVS
RVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALA
SIFNDDEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=346, Percent_Identity=44.5086705202312, Blast_Score=280, Evalue=1e-76,
Organism=Escherichia coli, GI1789087, Length=350, Percent_Identity=43.4285714285714, Blast_Score=269, Evalue=4e-73,
Organism=Escherichia coli, GI1788550, Length=342, Percent_Identity=42.1052631578947, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1790437, Length=484, Percent_Identity=36.3636363636364, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1790299, Length=425, Percent_Identity=37.4117647058824, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1789233, Length=345, Percent_Identity=43.768115942029, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1788905, Length=427, Percent_Identity=36.0655737704918, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI87081872, Length=345, Percent_Identity=37.6811594202899, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI87082152, Length=342, Percent_Identity=36.8421052631579, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1786524, Length=351, Percent_Identity=37.6068376068376, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1787583, Length=350, Percent_Identity=31.1428571428571, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=35.7446808510638, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=29.483282674772, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 53725; Mature: 53725

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLP
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
LEQVKVFATKIPWQPILLLGATDDLSANLIGSVEEPFNYPQLTELLHFCQVFGQQRRPDV
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVLGQSGTGKEVVARNIHYLSER
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
RDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLA
CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCEEEEHHHCCCCHH
MQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIE
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHEEEEEC
MPSLSERCEDIPLLLQELVSRVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALASIFNDDEPVEIPETRFPSEL
HCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMQTDQRILLVGNQTERIGRLSCILEFLGEQLETLDPSGLEQAVKETRFRALIVDLESLP
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
LEQVKVFATKIPWQPILLLGATDDLSANLIGSVEEPFNYPQLTELLHFCQVFGQQRRPDV
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PTSGNQTKLFRSLVGRSEGIVNVRHLISQVAPSDATVLVLGQSGTGKEVVARNIHYLSER
CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHC
RDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPLA
CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCEEEEHHHCCCCHH
MQVKLLRVLQERVFERVGGSKPIQANVRVVAATHRNLENMIENNEFREDLFYRLNVFPIE
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHHHHEEEEEC
MPSLSERCEDIPLLLQELVSRVFNEGRGKVRFTQRAIESLKEHDWSGNVRELSNLVERLT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
ILYPGGLVDVNDLPVKYRHIDVPEYCVEVSEEMLERDALASIFNDDEPVEIPETRFPSEL
HCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMSKD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2881918; 11481430; 8478331 [H]