| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fliK [C]
Identifier: 119775427
GI number: 119775427
Start: 2756429
End: 2758210
Strand: Reverse
Name: fliK [C]
Synonym: Sama_2292
Alternate gene names: 119775427
Gene position: 2758210-2756429 (Counterclockwise)
Preceding gene: 119775428
Following gene: 119775426
Centisome position: 64.05
GC content: 55.33
Gene sequence:
>1782_bases ATGGCACGGCGTGCCCTGGACAATGCGGGAGAACCACTGATGCAACAGATCCTCAATGTGCTTTTGGGTTCGGCTGGCGC TGCTGCCGGTCCAGCCAATCCTGAATCATCCGCCATCTCGGCTGATGGTGTTGATTTTGACTCTATCATTTCAAAAACAG TTGCTTACGAAGAATCTTCCGTCAAAAGTGTGCAGGTCAAAGGCCCAAGTTCCGACAACGCCGGTGATGCCATCTCCCAG GCTCAAGGCGGTGAGGTCAATGGCGATGCCTCTGGCGATGGCGTGTCTTCCGTACTGGCCCAAATCCAATTTTCCCGTCA ATTTGCCGCCGATAAGGCTGCCGTCAAAGGCGGCGAAGCTTTGCCGCCGGAAGCGGCAGCGTCAGAAATGCCGGTGGCGA CAGATGTTGTTATCGATGATGCATCCGTGGACATTGCCGCTGACGCGCTTTTTTTACGTTTCAGCGACCTGATGAAACAG GCAGATGAGGGTGAGAGAGAGCAAATTGCATCTGAGCTTGGCATGTCTCTGTCGGCGCTTATGGCACTGGATGAAACGGC ATTTAATACACTGATGGCAGACAATCCCTCCCTCAAAGACGGCTTGGCTTTGTTGCTGCAAGCAGATGCGCCGGGCGCTG ACACAGATAACGACGCCGCAAATCAGGTCGCGTTGTTGATGCAAACTCTGCTTGGCGCGCCGGTGCAGCAGAATGTGTCC GCTGACAATCCGTCAGAACATCCAGCCGATATCAGGCTTGGGGGCAGTTCAGCCGAGGCTGCGCTGAATAAGGCTGCCAA TCTTGCTCCCGAACAGACGCGGGGGTTGGATGTGGCCATGGCGCGCGTTGGCGGTGATCCCGAGGTGGACAATGCTGCTG TAACTGGCAAGGCTATGGCCGGTTCCACTGAGGCTGCAAGAACTGAGACTTTCCGCGCCGAGACGGACACAAAAAAGGGT GACGCCGGGCAGGCATTCACCCGCGCATTGGAGGCTACACGGGGGCTCGCTCCTGACGCTGTGGCAGGGAAAGAACTGGG CGACTTTGGTAATGAAGGCGTTTCTGGAATAACACCGCAGGCTGGTGTTGAAGCTTTAACCAAGGTCAGCGCTGATGCCT CAAGCAAAGTTAACGCTGAACAACAGGATACGGTCAAAGAGGCTCTGTCGGTTAAATCATTGGAGGCCGCCGGCCGTGCG GCAGACAGCAACCTTAAAGCGGAGCTGCCTGCCATAGATGCCAAGGGCCAGGCTTCAATAGAGTCTGTGGCCGACATTAA GCCGCCATCCCCGCTGCAAACCAGCCGCATCCATGAGACACCTGCCATGACAATGTCGCTGCGTACGGCTCAAGAGCGGC CCATGACACAACCGGATATGGTTGCCCGATTTGCTCCCGTGATGCATACCCAGCTTATTGCCATGGTCAGAGACGGCATA CAACAGGCCGAAATCCGCCTCGACCCACCCGAACTTGGCTCCATGATGGTTCGCATTCAGGTACAGGGTAATGAAACCCA GGTTCAGTTCCACGTTAACGCTCAGCAAACCAAAGATGTAGTCGAGCAGGCCATGCCCAGACTCAGAGAGCTGTTGGCTC AGCAGGGGATGGAATTGACCGATGGACAGGTATCCCATGAGCGTCGAGGCGAAGGCCGCGGACGTCAGGACACCCCGGAA GGCAGCCAGTTTGTGACCATGGATGAATTTCCAGCAGAAGAGTTACAATTAAGCGCAAATCAGACAACAAGTTATAGCTC GGGTATAGATTATTACGCTTAA
Upstream 100 bases:
>100_bases GCGGGATGCGAACAGGAGCCGAGTAGCTGTAACGATTGGCATGGCATTTGCTGGAATCCTGTCAGACTCATAGACTTAGT CCCAATCGGCGTTGTTTTTG
Downstream 100 bases:
>100_bases GCAGGTAACCTATAGACACTTGTTTAGTTCAGGCTTGAGTGAGCCTTGATGCACCCATGTGCAGAGCAAAAAAAGGATAA GCCAGATGGCAGAAGAAGAG
Product: flagellar hook-length control protein FliK
Products: NA
Alternate protein names: Polar Flagellar Hook-Length Control Protein FliK; Flagellar Hook-Length Control Protein FliK; Flagellar Protein; Flagellar Hook Length Control Protein FliK; Polar Flagellar Hook-Length Control Protein
Number of amino acids: Translated: 593; Mature: 592
Protein sequence:
>593_residues MARRALDNAGEPLMQQILNVLLGSAGAAAGPANPESSAISADGVDFDSIISKTVAYEESSVKSVQVKGPSSDNAGDAISQ AQGGEVNGDASGDGVSSVLAQIQFSRQFAADKAAVKGGEALPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQ ADEGEREQIASELGMSLSALMALDETAFNTLMADNPSLKDGLALLLQADAPGADTDNDAANQVALLMQTLLGAPVQQNVS ADNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDNAAVTGKAMAGSTEAARTETFRAETDTKKG DAGQAFTRALEATRGLAPDAVAGKELGDFGNEGVSGITPQAGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRA ADSNLKAELPAIDAKGQASIESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMHTQLIAMVRDGI QQAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLRELLAQQGMELTDGQVSHERRGEGRGRQDTPE GSQFVTMDEFPAEELQLSANQTTSYSSGIDYYA
Sequences:
>Translated_593_residues MARRALDNAGEPLMQQILNVLLGSAGAAAGPANPESSAISADGVDFDSIISKTVAYEESSVKSVQVKGPSSDNAGDAISQ AQGGEVNGDASGDGVSSVLAQIQFSRQFAADKAAVKGGEALPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQ ADEGEREQIASELGMSLSALMALDETAFNTLMADNPSLKDGLALLLQADAPGADTDNDAANQVALLMQTLLGAPVQQNVS ADNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDNAAVTGKAMAGSTEAARTETFRAETDTKKG DAGQAFTRALEATRGLAPDAVAGKELGDFGNEGVSGITPQAGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRA ADSNLKAELPAIDAKGQASIESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMHTQLIAMVRDGI QQAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLRELLAQQGMELTDGQVSHERRGEGRGRQDTPE GSQFVTMDEFPAEELQLSANQTTSYSSGIDYYA >Mature_592_residues ARRALDNAGEPLMQQILNVLLGSAGAAAGPANPESSAISADGVDFDSIISKTVAYEESSVKSVQVKGPSSDNAGDAISQA QGGEVNGDASGDGVSSVLAQIQFSRQFAADKAAVKGGEALPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQA DEGEREQIASELGMSLSALMALDETAFNTLMADNPSLKDGLALLLQADAPGADTDNDAANQVALLMQTLLGAPVQQNVSA DNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDNAAVTGKAMAGSTEAARTETFRAETDTKKGD AGQAFTRALEATRGLAPDAVAGKELGDFGNEGVSGITPQAGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRAA DSNLKAELPAIDAKGQASIESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMHTQLIAMVRDGIQ QAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLRELLAQQGMELTDGQVSHERRGEGRGRQDTPEG SQFVTMDEFPAEELQLSANQTTSYSSGIDYYA
Specific function: Controls The Length Of The Flagellar Hook. [C]
COG id: COG3144
COG function: function code N; Flagellar hook-length control protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61869; Mature: 61738
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRALDNAGEPLMQQILNVLLGSAGAAAGPANPESSAISADGVDFDSIISKTVAYEESS CCCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC VKSVQVKGPSSDNAGDAISQAQGGEVNGDASGDGVSSVLAQIQFSRQFAADKAAVKGGEA CCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC LPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQADEGEREQIASELGMSLSAL CCCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHH MALDETAFNTLMADNPSLKDGLALLLQADAPGADTDNDAANQVALLMQTLLGAPVQQNVS HHHHHHHHHHHHCCCCCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCC ADNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDNAAVTGKAMA CCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHCCCHHHHHHCCCCCCCCCCEECCCHHC GSTEAARTETFRAETDTKKGDAGQAFTRALEATRGLAPDAVAGKELGDFGNEGVSGITPQ CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCCCCCCCCH AGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRAADSNLKAELPAIDAKGQASI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH ESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMHTQLIAMVRDGI HHHHCCCCCCCCCHHHHCCCCCHHEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCH QQAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLRELLAQQGMELT HHHHEECCCHHCCCEEEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC DGQVSHERRGEGRGRQDTPEGSQFVTMDEFPAEELQLSANQTTSYSSGIDYYA CCCCCHHHCCCCCCCCCCCCCCEEEEECCCCHHHHEECCCCCCCCCCCCCCCC >Mature Secondary Structure ARRALDNAGEPLMQQILNVLLGSAGAAAGPANPESSAISADGVDFDSIISKTVAYEESS CCCHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC VKSVQVKGPSSDNAGDAISQAQGGEVNGDASGDGVSSVLAQIQFSRQFAADKAAVKGGEA CCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC LPPEAAASEMPVATDVVIDDASVDIAADALFLRFSDLMKQADEGEREQIASELGMSLSAL CCCCHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHH MALDETAFNTLMADNPSLKDGLALLLQADAPGADTDNDAANQVALLMQTLLGAPVQQNVS HHHHHHHHHHHHCCCCCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCC ADNPSEHPADIRLGGSSAEAALNKAANLAPEQTRGLDVAMARVGGDPEVDNAAVTGKAMA CCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHCCCHHHHHHCCCCCCCCCCEECCCHHC GSTEAARTETFRAETDTKKGDAGQAFTRALEATRGLAPDAVAGKELGDFGNEGVSGITPQ CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCHHHHHCCCCCCCCCCCH AGVEALTKVSADASSKVNAEQQDTVKEALSVKSLEAAGRAADSNLKAELPAIDAKGQASI HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH ESVADIKPPSPLQTSRIHETPAMTMSLRTAQERPMTQPDMVARFAPVMHTQLIAMVRDGI HHHHCCCCCCCCCHHHHCCCCCHHEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCH QQAEIRLDPPELGSMMVRIQVQGNETQVQFHVNAQQTKDVVEQAMPRLRELLAQQGMELT HHHHEECCCHHCCCEEEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC DGQVSHERRGEGRGRQDTPEGSQFVTMDEFPAEELQLSANQTTSYSSGIDYYA CCCCCHHHCCCCCCCCCCCCCCEEEEECCCCHHHHEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA