| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775373
Identifier: 119775373
GI number: 119775373
Start: 2702067
End: 2702303
Strand: Reverse
Name: 119775373
Synonym: Sama_2238
Alternate gene names: NA
Gene position: 2702303-2702067 (Counterclockwise)
Preceding gene: 119775374
Following gene: 119775372
Centisome position: 62.75
GC content: 45.57
Gene sequence:
>237_bases ATGATGTGTAGTTATTCTACTCAAGTGACGAGTGACAAAGAGCAAGGCTTGCCAGGCGAACCCTTCGGGCAGCATTTGGC TGATGTTTCTGCTACGTTAGCGTCCGTTTATGTAGAGTCACTACACAGCACGGACTTTGCCTTGCAAAAACACCAGCCAA ATTACTGCAAAAATAACCGTGAAACGTCAACAGCCCCTATCTTTTTACATTGCAGGAGCCACTTATGCAGGTGTTAA
Upstream 100 bases:
>100_bases GGGCCGTGACCTCAGTTACAAACCCTGGTTGTTAGAGGCTGTTGACACTTCGAGATTAAATTTTGTTCGCTCTGGCGAGC CTGTGCTCACGAAACGAGGA
Downstream 100 bases:
>100_bases CCACTGCAATCAATGAAGTAAAACTTATTATCCCCAGTGTATTTGAGGATGAACGGGGATACTTTTTCGAAAGCTGGCAG CAGCAGCGATTTGCCGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 78; Mature: 78
Protein sequence:
>78_residues MMCSYSTQVTSDKEQGLPGEPFGQHLADVSATLASVYVESLHSTDFALQKHQPNYCKNNRETSTAPIFLHCRSHLCRC
Sequences:
>Translated_78_residues MMCSYSTQVTSDKEQGLPGEPFGQHLADVSATLASVYVESLHSTDFALQKHQPNYCKNNRETSTAPIFLHCRSHLCRC >Mature_78_residues MMCSYSTQVTSDKEQGLPGEPFGQHLADVSATLASVYVESLHSTDFALQKHQPNYCKNNRETSTAPIFLHCRSHLCRC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8718; Mature: 8718
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 9.0 %Cys+Met (Translated Protein) 6.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 9.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMCSYSTQVTSDKEQGLPGEPFGQHLADVSATLASVYVESLHSTDFALQKHQPNYCKNNR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC ETSTAPIFLHCRSHLCRC CCCCCHHHHEEHHHHCCC >Mature Secondary Structure MMCSYSTQVTSDKEQGLPGEPFGQHLADVSATLASVYVESLHSTDFALQKHQPNYCKNNR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC ETSTAPIFLHCRSHLCRC CCCCCHHHHEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA