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The map label for this gene is ydcI [C]

Identifier: 119775362

GI number: 119775362

Start: 2690378

End: 2691370

Strand: Direct

Name: ydcI [C]

Synonym: Sama_2227

Alternate gene names: 119775362

Gene position: 2690378-2691370 (Clockwise)

Preceding gene: 119775361

Following gene: 119775363

Centisome position: 62.48

GC content: 53.17

Gene sequence:

>993_bases
ATGAACAAGCCTTTGGATAAACAACTGGCAGAGCTCGATATTTTTTCACTGCTGCTCTTTCGCGCCATCTTCGAGACCGG
GCACGCCAACATCGCTGCCAGACAGTTGGATGTGTCTGCCCCCAAAGTCAGCCGGGCACTCGCCAGCTTACGGCTTATCT
TTGCCGATGAGCTCTTCTATCGCCGTCAGCAGGGGTTCAGACCAACTCCGCTGGCAGAGCAGATCTATCCTGCCATTCGC
GAGCTGACCGACAGTATTAACCTCCTTGGCATGCAGCTTAAAGACCATCAGGCATTCCACAGACAAGAGTGTCAGGTATT
CGACCTGGCCGTCAGTTCCGGGATACTGACGACCCTGGCGTTGGAATTCAACCGCAGAGAAGGGCTCTGCCCTTCCGTGG
TGTTACATCATTGGCAGGAAAATACGGCCGACAGGATACATGCCGGCGAGCTGGATTTGGGCCTGGCATTGGCACCTGAA
CCACATACCGAACTCAGTTACGAACGCCTTTGCGACGCCCCCGGTCTTTGCCTGGTCGGCGCGGCCAATCACCCTATTTG
GCAATATACCGATATTTGTCTTGAGCACATCTGCGAATATCCGTTTTTGTGCATGAACTACCCCGGATTCAACGATAAAG
TTGACCCGCTGGAGCTGTTTTGCCACAGGGAAGGCCTTATTCCACCCACGGTGCTGAGGGTGACGGATAAAGAAGAATGG
TTTGGCCATCTTTTGTGCCAACACAGCCTGGCATTTGCCTCGCCGCTGGAATGGGGATTACTGAATGCCTTGCCCGGTGT
TGAAATCAAACATCTGCCTGCAAAGGAAATTTCCCGTCTGCACAGTGGTTCTGCCGTGCCCGGCCTCTACCTTATCGAAA
AGCCTGCCCATCACCGCCGATACAGCCCAGACGACAGGGAAAAATTGCTGCACATTATCTCGCTCACATTGGGATTGGTA
ACCGAGGATCATCCGGTAAATTTCAGCATCTAA

Upstream 100 bases:

>100_bases
CGCGAGGTTAAGTGATTGTTAAAAACATGACATTTATCAAAGCCACAGTCGGCAGGCTTTGCTAGTGTAGTTACATTAAT
CACCCTCTTTTTTGCTCTCG

Downstream 100 bases:

>100_bases
AATTACCAATTGCCCAAATCGAAATTCACAAATAAGAGTTTAAAAGCCTGTTTCACACATTTGAAACAGACTCACAACTA
CCACTTTATATATATATTCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Regulatory Protein LysR; Transcriptional Regulator-Like Protein; Transcriptional Regulator; Transcriptional Regulator LysR Family Protein; Transcriptional Regulator LysR Family

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNKPLDKQLAELDIFSLLLFRAIFETGHANIAARQLDVSAPKVSRALASLRLIFADELFYRRQQGFRPTPLAEQIYPAIR
ELTDSINLLGMQLKDHQAFHRQECQVFDLAVSSGILTTLALEFNRREGLCPSVVLHHWQENTADRIHAGELDLGLALAPE
PHTELSYERLCDAPGLCLVGAANHPIWQYTDICLEHICEYPFLCMNYPGFNDKVDPLELFCHREGLIPPTVLRVTDKEEW
FGHLLCQHSLAFASPLEWGLLNALPGVEIKHLPAKEISRLHSGSAVPGLYLIEKPAHHRRYSPDDREKLLHIISLTLGLV
TEDHPVNFSI

Sequences:

>Translated_330_residues
MNKPLDKQLAELDIFSLLLFRAIFETGHANIAARQLDVSAPKVSRALASLRLIFADELFYRRQQGFRPTPLAEQIYPAIR
ELTDSINLLGMQLKDHQAFHRQECQVFDLAVSSGILTTLALEFNRREGLCPSVVLHHWQENTADRIHAGELDLGLALAPE
PHTELSYERLCDAPGLCLVGAANHPIWQYTDICLEHICEYPFLCMNYPGFNDKVDPLELFCHREGLIPPTVLRVTDKEEW
FGHLLCQHSLAFASPLEWGLLNALPGVEIKHLPAKEISRLHSGSAVPGLYLIEKPAHHRRYSPDDREKLLHIISLTLGLV
TEDHPVNFSI
>Mature_330_residues
MNKPLDKQLAELDIFSLLLFRAIFETGHANIAARQLDVSAPKVSRALASLRLIFADELFYRRQQGFRPTPLAEQIYPAIR
ELTDSINLLGMQLKDHQAFHRQECQVFDLAVSSGILTTLALEFNRREGLCPSVVLHHWQENTADRIHAGELDLGLALAPE
PHTELSYERLCDAPGLCLVGAANHPIWQYTDICLEHICEYPFLCMNYPGFNDKVDPLELFCHREGLIPPTVLRVTDKEEW
FGHLLCQHSLAFASPLEWGLLNALPGVEIKHLPAKEISRLHSGSAVPGLYLIEKPAHHRRYSPDDREKLLHIISLTLGLV
TEDHPVNFSI

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37320; Mature: 37320

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPLDKQLAELDIFSLLLFRAIFETGHANIAARQLDVSAPKVSRALASLRLIFADELFY
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHEECCCCHHHHHHHHHHHHHHHHHHHH
RRQQGFRPTPLAEQIYPAIRELTDSINLLGMQLKDHQAFHRQECQVFDLAVSSGILTTLA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
LEFNRREGLCPSVVLHHWQENTADRIHAGELDLGLALAPEPHTELSYERLCDAPGLCLVG
HHHCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCCCCCHHHHCCCCCEEEEE
AANHPIWQYTDICLEHICEYPFLCMNYPGFNDKVDPLELFCHREGLIPPTVLRVTDKEEW
CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEECCHHHH
FGHLLCQHSLAFASPLEWGLLNALPGVEIKHLPAKEISRLHSGSAVPGLYLIEKPAHHRR
HHHHHHHHHHHHCCCCHHHHHHCCCCCCEECCCHHHHHHHHCCCCCCCEEEECCCHHCCC
YSPDDREKLLHIISLTLGLVTEDHPVNFSI
CCCCHHHHHHHHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MNKPLDKQLAELDIFSLLLFRAIFETGHANIAARQLDVSAPKVSRALASLRLIFADELFY
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHEECCCCHHHHHHHHHHHHHHHHHHHH
RRQQGFRPTPLAEQIYPAIRELTDSINLLGMQLKDHQAFHRQECQVFDLAVSSGILTTLA
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
LEFNRREGLCPSVVLHHWQENTADRIHAGELDLGLALAPEPHTELSYERLCDAPGLCLVG
HHHCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCEEECCCCCCCCCHHHHCCCCCEEEEE
AANHPIWQYTDICLEHICEYPFLCMNYPGFNDKVDPLELFCHREGLIPPTVLRVTDKEEW
CCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEECCHHHH
FGHLLCQHSLAFASPLEWGLLNALPGVEIKHLPAKEISRLHSGSAVPGLYLIEKPAHHRR
HHHHHHHHHHHHCCCCHHHHHHCCCCCCEECCCHHHHHHHHCCCCCCCEEEECCCHHCCC
YSPDDREKLLHIISLTLGLVTEDHPVNFSI
CCCCHHHHHHHHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA