| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yaeQ [H]
Identifier: 119775321
GI number: 119775321
Start: 2645717
End: 2646256
Strand: Reverse
Name: yaeQ [H]
Synonym: Sama_2186
Alternate gene names: 119775321
Gene position: 2646256-2645717 (Counterclockwise)
Preceding gene: 119775322
Following gene: 119775303
Centisome position: 61.45
GC content: 54.63
Gene sequence:
>540_bases ATGACGCTTAAGTCCGATGTCCATAAAGTCAGCTTTGAGATTGCCGATCTGCGCCGTGGCTACTTTGGCTATCACAAACT GACACTGGCACGGCATCCATCCGAGACCGAGCAGCGATTGATGCTGAGACTGCTGGCCTTTGCACTCTATGCCTCGGCCG AGCTTAAATTTGTCGGTGAGCTGTGTAATCAGGACGAGCCCGAGCTCTGTGAACAGGCGCTGGATGGTCGTTATCTGTTT TGGGCAGAATTTGGTCTGGCGGATGAGCGGCGGATAAAGCGCGCTGTCCACCGGGCCGATAAGGTGGTCGTGTTCGCCTA CGGCGGGCAGGATTTAGCTCATTGGTGGGATGATATGGCAGGAAAATGCACCCGAATCGACAGCCTGTCTGTGCTCGCGT TTGATAATCCAAGCCTGGAGACCCTGTTGCCCTTCGTGGCCAAAACCATGGCGCTGGCGGTCAATATCGATGAGGATGGC AGCGTGAGAATATCCAATGGTCAATACGACGTGGTGGTTGTCCCCCGGGTTCTCAAATAG
Upstream 100 bases:
>100_bases GGTATACGCTGATTCGGCCCAGATAAAGGCGCTGCGGGCCCATTTCCCTCAGGCCAGGCATCTGAGGCCTGGCGCGCTTT AACGCCGTTTCGTCATCGCC
Downstream 100 bases:
>100_bases CGCTATTCAATCGCCTCGGCAGAACACGGCGTATCTTAACATTGCGGTATTTACAGACTGAATATCCCATCAATAAAAAA GGAGCCTCAAGGCTCCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTLKSDVHKVSFEIADLRRGYFGYHKLTLARHPSETEQRLMLRLLAFALYASAELKFVGELCNQDEPELCEQALDGRYLF WAEFGLADERRIKRAVHRADKVVVFAYGGQDLAHWWDDMAGKCTRIDSLSVLAFDNPSLETLLPFVAKTMALAVNIDEDG SVRISNGQYDVVVVPRVLK
Sequences:
>Translated_179_residues MTLKSDVHKVSFEIADLRRGYFGYHKLTLARHPSETEQRLMLRLLAFALYASAELKFVGELCNQDEPELCEQALDGRYLF WAEFGLADERRIKRAVHRADKVVVFAYGGQDLAHWWDDMAGKCTRIDSLSVLAFDNPSLETLLPFVAKTMALAVNIDEDG SVRISNGQYDVVVVPRVLK >Mature_178_residues TLKSDVHKVSFEIADLRRGYFGYHKLTLARHPSETEQRLMLRLLAFALYASAELKFVGELCNQDEPELCEQALDGRYLFW AEFGLADERRIKRAVHRADKVVVFAYGGQDLAHWWDDMAGKCTRIDSLSVLAFDNPSLETLLPFVAKTMALAVNIDEDGS VRISNGQYDVVVVPRVLK
Specific function: Unknown
COG id: COG4681
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786388, Length=176, Percent_Identity=40.3409090909091, Blast_Score=126, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009822 [H]
Pfam domain/function: PF07152 YaeQ [H]
EC number: NA
Molecular weight: Translated: 20323; Mature: 20191
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKSDVHKVSFEIADLRRGYFGYHKLTLARHPSETEQRLMLRLLAFALYASAELKFVGE CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH LCNQDEPELCEQALDGRYLFWAEFGLADERRIKRAVHRADKVVVFAYGGQDLAHWWDDMA HHCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHC GKCTRIDSLSVLAFDNPSLETLLPFVAKTMALAVNIDEDGSVRISNGQYDVVVVPRVLK CCEEEECCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCEEECCCCEEEEECCCCCC >Mature Secondary Structure TLKSDVHKVSFEIADLRRGYFGYHKLTLARHPSETEQRLMLRLLAFALYASAELKFVGE CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH LCNQDEPELCEQALDGRYLFWAEFGLADERRIKRAVHRADKVVVFAYGGQDLAHWWDDMA HHCCCCHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHC GKCTRIDSLSVLAFDNPSLETLLPFVAKTMALAVNIDEDGSVRISNGQYDVVVVPRVLK CCEEEECCEEEEEECCCCHHHHHHHHHHHHHEEEEECCCCCEEECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]