| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is apr [H]
Identifier: 119775320
GI number: 119775320
Start: 2643189
End: 2645600
Strand: Direct
Name: apr [H]
Synonym: Sama_2185
Alternate gene names: 119775320
Gene position: 2643189-2645600 (Clockwise)
Preceding gene: 119775319
Following gene: 119775330
Centisome position: 61.38
GC content: 56.05
Gene sequence:
>2412_bases ATGACAATGAAACACAAAAAAACTTTAGCCCTGGGTTTATCGACCCTCGCACTGGCAGTCTCTGCCGGTGTTCATGCCGC ACCTACCGACGCAGTCTTCGCCAAAGGCGAAAACTCCCCGCTACCAAAGCGCTATGTAGTTAAATTCAAAAACAATGCCG CCACCGAGCTTTACAATGCTGAAGACACACTCAACAGCATGCAGTATCAGCCACGCAGCCATGAAGTCTATGGTCACCAC CGTGCCCTGAATGCCGCCAGTGCCAAAGAAATGAAGCGTATCGGTCGCAGCAACGCTTACACCGTGAAGCTGGACAACAA TGGCATCAAGGCCCTGCGCGCCCGTGCCGATGTTGAATTTGTGGAAGAAGACGTGCCACGTCGTCTGCTTGCTGAAACCA CCCCCTGGGGTCAAACCTTTGTTGGTGCAACTCAGCTGGCCGATAACCTGAGCGGCAACCGCACCATCTGTATCATTGAC TCAGGCTATGACCGTGGTCATGCCGATCTGTCAGGCAACAATGTGACCGGTACCAATAACTCAGGCACCGGCAACTGGTT CGAACCAGGCAACAACAACGCCCACGGCACCCACGTAGCTGGCACCATTGCGGCCATTGCCAACGGTGAAGGCGTGGTGG GCGTGCTGCCAAACCAAAATGCCAATATCCATATTATCAAAGTGTTCAACGAAGCCGGCTGGGGTTATTCTTCAAGCCTG GTCAGTGCCGTGGACACCTGTGTGGCTAACGGCGCCAACGTCGTCAGTATGTCTCTGGGCGGTGCCAGCTCAAGTACCAC TGAGCGCAACGCCCTGGCGGCCCACTACAACAACGGCGTGCTGCTGATTGCTGCCGCGGGTAACGACGGTGATAACACCC ACAGCTACCCGGCATCTTACGATAGCGTGGTATCGGTTGCTGCCGTAGACAGCACCAAGCAGCATGCTGCGTTTTCTCAG TACACCAATCAAGTGGAAGTATCCGGCCCCGGCGAAGCCATTCTGTCTACCGTGACCCGCGGCGAAGGCCGTTTGTCTGA CATCGTGGTTGCTGGTCAGTCTTACTTCAACAACGGTGTTGTACCTCATAACCGCTTGGTAAAATCCGGTACCAGCTATG CTCCAGCACCAATCAACGGCACTGTGACGGCCACCCTGGCCGAGTGCAGCGTGTCTGGCAGCACCTTTAACTGTGGCAAC ATGGCCGGCAAGGTGTGTCTGGTTGAGCGTGTAGGCAACCAGGGTTCAAGCTACCCTGAAATCAACGCGGCCAAGGCCTG TCAAAACGCCGGTGCTTCTGCCACCATCGTTTACTCAAACACCGCCCTGCCCGGCCTGCAAAATCCCTTTGTGGTGGACA CCAACAGCGAGTTGACCAAGGTGTCAGTGTCGGTTGACCGCGCCACCGGTTTGGCGCTGCGCAGTCATATTGGTTCCAGT GTGACCGTATCCAGCGAAGGCGGAAAGGACTACGAGTACTACAATGGTACGTCCATGGCGACCCCGCACGTTTCCGGTGT AGCCACTTTGGTGTGGAGTTATCATCCGGAGTGTAGCGCCGCTCAGGTGCGTGCTGCCCTGCGTACGACTGCCGAAGATC TGGATGTAGCTGGCCGTGATGACAAGACAGGTTATGGTCTGGTTGATGCAGTTGCCGCCAAAGAGTATCTGGACGCTTCC TGTGACGGCCCAACCAACGGTGGTGGCAACAATGGCGGCTCAGACGCCGAGATGACCAATGGTGTTGCCAAGAGCAACCT CGCCGGTGCCAAGAATGAAGAGCTGCACTTCTTCATCGATGTGCCTGCCGGTGCCACCAACCTGAACTTTGCCATGAGCG GTGGCAGCGGTGATGCGGATCTGTACGTTCAGTACGGTGCGGCTCCAACCACCAGCAGCTATGATTGCCGCCCATGGAAA GGGGGTAACACTGAGTCTTGCCCAATCACCACCGCACAGGCCGGTACCTACTATGTCATGGTACAGGGTTACAGCGCCTT CAGTGGTGTGAACCTGGTGGCAAGCTACACTGCCCCCACCGGCGGCAGCACTGGCGGCACCACGGGCCCTGCGACTTACA CCAACACCGATAACTACAGCATTCCGGACAACAACACCGCCGGGATCAGCAGCCCTATCGATGTAAGCCGCACTGGCGAT GCGGGCACTGTCACTGTGAAAGTGAACATCGTACACACCTACATTGGCGATTTGCAGGTCGAACTTATCACTCCAAGTGG TCAGGTAGCCGTGCTGCACGACAACACAGGTGCAGGTACCGATAACATCAACAAGACTTACACTGTGAATGCCACAGGTG TTGAGTCTCAGGGTACCTGGAAGCTCAAAGCCGTTGACAGCTCACGCCGCGACACTGGCTACATCGACTCATGGGAAATC TCGTTCCAATAA
Upstream 100 bases:
>100_bases TCGATGGATACATTCACTGCCGAAAATGGATTTCAGGCTTTACCGGATGGATGCCAGATAACAACGACAAGTTCTGCCTC TTGCAACATGGAAGACGAGT
Downstream 100 bases:
>100_bases TCGGTTGAGTCTGTGAAAAAGGAGCCTTGAGGCTCCTTTTTTATTGATGGGATATTCAGTCTGTAAATACCGCAATGTTA AGATACGCCGTGTTCTGCCG
Product: cold-active serine alkaline protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 803; Mature: 802
Protein sequence:
>803_residues MTMKHKKTLALGLSTLALAVSAGVHAAPTDAVFAKGENSPLPKRYVVKFKNNAATELYNAEDTLNSMQYQPRSHEVYGHH RALNAASAKEMKRIGRSNAYTVKLDNNGIKALRARADVEFVEEDVPRRLLAETTPWGQTFVGATQLADNLSGNRTICIID SGYDRGHADLSGNNVTGTNNSGTGNWFEPGNNNAHGTHVAGTIAAIANGEGVVGVLPNQNANIHIIKVFNEAGWGYSSSL VSAVDTCVANGANVVSMSLGGASSSTTERNALAAHYNNGVLLIAAAGNDGDNTHSYPASYDSVVSVAAVDSTKQHAAFSQ YTNQVEVSGPGEAILSTVTRGEGRLSDIVVAGQSYFNNGVVPHNRLVKSGTSYAPAPINGTVTATLAECSVSGSTFNCGN MAGKVCLVERVGNQGSSYPEINAAKACQNAGASATIVYSNTALPGLQNPFVVDTNSELTKVSVSVDRATGLALRSHIGSS VTVSSEGGKDYEYYNGTSMATPHVSGVATLVWSYHPECSAAQVRAALRTTAEDLDVAGRDDKTGYGLVDAVAAKEYLDAS CDGPTNGGGNNGGSDAEMTNGVAKSNLAGAKNEELHFFIDVPAGATNLNFAMSGGSGDADLYVQYGAAPTTSSYDCRPWK GGNTESCPITTAQAGTYYVMVQGYSAFSGVNLVASYTAPTGGSTGGTTGPATYTNTDNYSIPDNNTAGISSPIDVSRTGD AGTVTVKVNIVHTYIGDLQVELITPSGQVAVLHDNTGAGTDNINKTYTVNATGVESQGTWKLKAVDSSRRDTGYIDSWEI SFQ
Sequences:
>Translated_803_residues MTMKHKKTLALGLSTLALAVSAGVHAAPTDAVFAKGENSPLPKRYVVKFKNNAATELYNAEDTLNSMQYQPRSHEVYGHH RALNAASAKEMKRIGRSNAYTVKLDNNGIKALRARADVEFVEEDVPRRLLAETTPWGQTFVGATQLADNLSGNRTICIID SGYDRGHADLSGNNVTGTNNSGTGNWFEPGNNNAHGTHVAGTIAAIANGEGVVGVLPNQNANIHIIKVFNEAGWGYSSSL VSAVDTCVANGANVVSMSLGGASSSTTERNALAAHYNNGVLLIAAAGNDGDNTHSYPASYDSVVSVAAVDSTKQHAAFSQ YTNQVEVSGPGEAILSTVTRGEGRLSDIVVAGQSYFNNGVVPHNRLVKSGTSYAPAPINGTVTATLAECSVSGSTFNCGN MAGKVCLVERVGNQGSSYPEINAAKACQNAGASATIVYSNTALPGLQNPFVVDTNSELTKVSVSVDRATGLALRSHIGSS VTVSSEGGKDYEYYNGTSMATPHVSGVATLVWSYHPECSAAQVRAALRTTAEDLDVAGRDDKTGYGLVDAVAAKEYLDAS CDGPTNGGGNNGGSDAEMTNGVAKSNLAGAKNEELHFFIDVPAGATNLNFAMSGGSGDADLYVQYGAAPTTSSYDCRPWK GGNTESCPITTAQAGTYYVMVQGYSAFSGVNLVASYTAPTGGSTGGTTGPATYTNTDNYSIPDNNTAGISSPIDVSRTGD AGTVTVKVNIVHTYIGDLQVELITPSGQVAVLHDNTGAGTDNINKTYTVNATGVESQGTWKLKAVDSSRRDTGYIDSWEI SFQ >Mature_802_residues TMKHKKTLALGLSTLALAVSAGVHAAPTDAVFAKGENSPLPKRYVVKFKNNAATELYNAEDTLNSMQYQPRSHEVYGHHR ALNAASAKEMKRIGRSNAYTVKLDNNGIKALRARADVEFVEEDVPRRLLAETTPWGQTFVGATQLADNLSGNRTICIIDS GYDRGHADLSGNNVTGTNNSGTGNWFEPGNNNAHGTHVAGTIAAIANGEGVVGVLPNQNANIHIIKVFNEAGWGYSSSLV SAVDTCVANGANVVSMSLGGASSSTTERNALAAHYNNGVLLIAAAGNDGDNTHSYPASYDSVVSVAAVDSTKQHAAFSQY TNQVEVSGPGEAILSTVTRGEGRLSDIVVAGQSYFNNGVVPHNRLVKSGTSYAPAPINGTVTATLAECSVSGSTFNCGNM AGKVCLVERVGNQGSSYPEINAAKACQNAGASATIVYSNTALPGLQNPFVVDTNSELTKVSVSVDRATGLALRSHIGSSV TVSSEGGKDYEYYNGTSMATPHVSGVATLVWSYHPECSAAQVRAALRTTAEDLDVAGRDDKTGYGLVDAVAAKEYLDASC DGPTNGGGNNGGSDAEMTNGVAKSNLAGAKNEELHFFIDVPAGATNLNFAMSGGSGDADLYVQYGAAPTTSSYDCRPWKG GNTESCPITTAQAGTYYVMVQGYSAFSGVNLVASYTAPTGGSTGGTTGPATYTNTDNYSIPDNNTAGISSPIDVSRTGDA GTVTVKVNIVHTYIGDLQVELITPSGQVAVLHDNTGAGTDNINKTYTVNATGVESQGTWKLKAVDSSRRDTGYIDSWEIS FQ
Specific function: Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 - InterPro: IPR009020 - InterPro: IPR010259 [H]
Pfam domain/function: PF05922 Inhibitor_I9; PF00082 Peptidase_S8 [H]
EC number: =3.4.21.62 [H]
Molecular weight: Translated: 83454; Mature: 83323
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMKHKKTLALGLSTLALAVSAGVHAAPTDAVFAKGENSPLPKRYVVKFKNNAATELYNA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCEEECC EDTLNSMQYQPRSHEVYGHHRALNAASAKEMKRIGRSNAYTVKLDNNGIKALRARADVEF HHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHCCHHH VEEDVPRRLLAETTPWGQTFVGATQLADNLSGNRTICIIDSGYDRGHADLSGNNVTGTNN HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEECCCCC SGTGNWFEPGNNNAHGTHVAGTIAAIANGEGVVGVLPNQNANIHIIKVFNEAGWGYSSSL CCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCHHHHH VSAVDTCVANGANVVSMSLGGASSSTTERNALAAHYNNGVLLIAAAGNDGDNTHSYPASY HHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC DSVVSVAAVDSTKQHAAFSQYTNQVEVSGPGEAILSTVTRGEGRLSDIVVAGQSYFNNGV HHEEEEEEECCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCEEEEEEECHHHHCCCC VPHNRLVKSGTSYAPAPINGTVTATLAECSVSGSTFNCGNMAGKVCLVERVGNQGSSYPE CCCHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCC INAAKACQNAGASATIVYSNTALPGLQNPFVVDTNSELTKVSVSVDRATGLALRSHIGSS CCHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEEEEECHHHHHHHHHHCCCE VTVSSEGGKDYEYYNGTSMATPHVSGVATLVWSYHPECSAAQVRAALRTTAEDLDVAGRD EEEECCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCHHHCCCCCCC DKTGYGLVDAVAAKEYLDASCDGPTNGGGNNGGSDAEMTNGVAKSNLAGAKNEELHFFID CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCEEEEEE VPAGATNLNFAMSGGSGDADLYVQYGAAPTTSSYDCRPWKGGNTESCPITTAQAGTYYVM CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE VQGYSAFSGVNLVASYTAPTGGSTGGTTGPATYTNTDNYSIPDNNTAGISSPIDVSRTGD EECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC AGTVTVKVNIVHTYIGDLQVELITPSGQVAVLHDNTGAGTDNINKTYTVNATGVESQGTW CEEEEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCE KLKAVDSSRRDTGYIDSWEISFQ EEEEECCCCCCCCCEECEEEEEC >Mature Secondary Structure TMKHKKTLALGLSTLALAVSAGVHAAPTDAVFAKGENSPLPKRYVVKFKNNAATELYNA CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCEEECC EDTLNSMQYQPRSHEVYGHHRALNAASAKEMKRIGRSNAYTVKLDNNGIKALRARADVEF HHHHHHHCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCEEHHHHCCHHH VEEDVPRRLLAETTPWGQTFVGATQLADNLSGNRTICIIDSGYDRGHADLSGNNVTGTNN HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEECCCCC SGTGNWFEPGNNNAHGTHVAGTIAAIANGEGVVGVLPNQNANIHIIKVFNEAGWGYSSSL CCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCEEEEEEEECCCCCHHHHH VSAVDTCVANGANVVSMSLGGASSSTTERNALAAHYNNGVLLIAAAGNDGDNTHSYPASY HHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC DSVVSVAAVDSTKQHAAFSQYTNQVEVSGPGEAILSTVTRGEGRLSDIVVAGQSYFNNGV HHEEEEEEECCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCEEEEEEECHHHHCCCC VPHNRLVKSGTSYAPAPINGTVTATLAECSVSGSTFNCGNMAGKVCLVERVGNQGSSYPE CCCHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCCC INAAKACQNAGASATIVYSNTALPGLQNPFVVDTNSELTKVSVSVDRATGLALRSHIGSS CCHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCEEEEEEEECHHHHHHHHHHCCCE VTVSSEGGKDYEYYNGTSMATPHVSGVATLVWSYHPECSAAQVRAALRTTAEDLDVAGRD EEEECCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCHHHCCCCCCC DKTGYGLVDAVAAKEYLDASCDGPTNGGGNNGGSDAEMTNGVAKSNLAGAKNEELHFFID CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCEEEEEE VPAGATNLNFAMSGGSGDADLYVQYGAAPTTSSYDCRPWKGGNTESCPITTAQAGTYYVM CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEE VQGYSAFSGVNLVASYTAPTGGSTGGTTGPATYTNTDNYSIPDNNTAGISSPIDVSRTGD EECCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC AGTVTVKVNIVHTYIGDLQVELITPSGQVAVLHDNTGAGTDNINKTYTVNATGVESQGTW CEEEEEEEEEEEEEECCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCE KLKAVDSSRRDTGYIDSWEISFQ EEEEECCCCCCCCCEECEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3001653; 4967581; 8512925; 9425066 [H]