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The map label for this gene is alkN [H]

Identifier: 119775275

GI number: 119775275

Start: 2584975

End: 2586414

Strand: Reverse

Name: alkN [H]

Synonym: Sama_2140

Alternate gene names: 119775275

Gene position: 2586414-2584975 (Counterclockwise)

Preceding gene: 119775276

Following gene: 119775271

Centisome position: 60.06

GC content: 56.04

Gene sequence:

>1440_bases
ATGAAACAAATAACTTTTCGTAAAATTGATGCGATTCTGATCAAATTCAGTCTTAACGGTAAATTTTGGTTGGTGTGCTC
CATGGTGGCTGCCATCACAGCCGTTGTGGCGCTGGCGAATTATCGCCTGCAGCTGGCCACCATAGAATCCGCCAGTGACG
CGCGGGTCAGCGCAGCCCTCGATGCCTATGCAGAAATCGCCCGGGACAACGATCTGCAAGGGGACGCGCTCAGGGCATTT
GCCACGCGCCATGGTTTGTCTCAGTCCGGCCAGAGCGGGCGCAAAGGCAATACAGTCACGGCAGTGACCAACCTTGACGG
TTCGCTGCTGGCGCTTAGCCGCAATGTGGCTGATTGGGAGAGTGAGTCCCGCAGCGATGCCAGTATGATGCTCTGGTGGG
CCGCTTTGGGATTGCTGCCGCTGTTTCAGCTCAGCTACTGGATGTCCACGTCCCTTGGTGGCGGCCTATGGGATATGTAC
ATGGCCATCAAGCGTTTGGCCGATGGCGACCTGACCCAGCGACTGAATTTTTTCGGCACCGATGACTTCAGTCTCATTGC
CCGGGAAATTGACCGCTGCGCAGACAACATGAGTGATATGCTTTCTGCCATTCGTAACAACGCCGACACCCTGAAACGTG
CGTCCTCGGCGTTTTCCAATCAGGCCCAAAGCAGTGACAGTCTCGCACGGCGGCAACACGAGTTTCTCGATTCAGTGGCT
GTGGCCATGTCACAGATGACGTCGGCCATTGAAGAAGTGTCGGCCAATGCCTCGGCAACATCCACTCAAACCCGCTCCAA
CGCAGGGGCAGTTAAAGAAAGCCAAAAACGTATTACCAATACGGTGTCAGGCATTGCCGAACTGTCCGGCAAGATAGGGG
ATGCATCGTCTTCGGTGGATGCACTGTCACGTGAAGCAACCGAGATAAGCGCCGTGGTCACAGTGATCGACAGCATCTCA
GAGCAAACCAACCTGCTTGCCCTGAACGCAGCCATTGAGGCCGCCCGCGCCGGTGAGCAGGGAAGGGGCTTTGCGGTGGT
GGCCGATGAAGTCCGTACCCTGGCTGGCCGTACCCAACAGGCCACTGTGGAAATTCAATCCATGATTGAAAGCCTGCAAT
CCGGCAGTAAGGCGCTGTCCGGCATAACGGGTGACATTGTCAGCCGGGCAGAGCAGGGAAAGAGTGCGGTTTCGCTGGTG
GGTGAGGATGTGGGAAATATTGCAGATTCCATCAATCAGGTGTTTGATATGGCAAGCCATATAGCGGCATCGGCCGAGGA
GCAGAGTGTGGCGTGCCGTGAGATTGCAGCGCAGCTTGCTGAAATCAGAAACCAGTCGGGCGTTATCAGTGATAATGCGC
ACAACGCGCTGGAATTGGCCCATGAACTGGCACAGGCCTCGGTGGCGTTGACGGATATCCTGGGACAGTACCGCACCTGA

Upstream 100 bases:

>100_bases
TAATGTTGCATGGCTAAATATGCCGCTTTGCTCAGCTCAGCCCGGTCACCATCTATACTTACCCATGACCAGGAACGCTG
ACCGGGCCGGAGAATAATCA

Downstream 100 bases:

>100_bases
TGTCCGGCAGCTGATAGCTTGATTGGTATTGGTTATCTCGAACGAGCCTCAGTCGTTGATGGCTGACGAAAATTCAGCAT
GAGACATAAAAAAAGCGCCG

Product: putative methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MKQITFRKIDAILIKFSLNGKFWLVCSMVAAITAVVALANYRLQLATIESASDARVSAALDAYAEIARDNDLQGDALRAF
ATRHGLSQSGQSGRKGNTVTAVTNLDGSLLALSRNVADWESESRSDASMMLWWAALGLLPLFQLSYWMSTSLGGGLWDMY
MAIKRLADGDLTQRLNFFGTDDFSLIAREIDRCADNMSDMLSAIRNNADTLKRASSAFSNQAQSSDSLARRQHEFLDSVA
VAMSQMTSAIEEVSANASATSTQTRSNAGAVKESQKRITNTVSGIAELSGKIGDASSSVDALSREATEISAVVTVIDSIS
EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQATVEIQSMIESLQSGSKALSGITGDIVSRAEQGKSAVSLV
GEDVGNIADSINQVFDMASHIAASAEEQSVACREIAAQLAEIRNQSGVISDNAHNALELAHELAQASVALTDILGQYRT

Sequences:

>Translated_479_residues
MKQITFRKIDAILIKFSLNGKFWLVCSMVAAITAVVALANYRLQLATIESASDARVSAALDAYAEIARDNDLQGDALRAF
ATRHGLSQSGQSGRKGNTVTAVTNLDGSLLALSRNVADWESESRSDASMMLWWAALGLLPLFQLSYWMSTSLGGGLWDMY
MAIKRLADGDLTQRLNFFGTDDFSLIAREIDRCADNMSDMLSAIRNNADTLKRASSAFSNQAQSSDSLARRQHEFLDSVA
VAMSQMTSAIEEVSANASATSTQTRSNAGAVKESQKRITNTVSGIAELSGKIGDASSSVDALSREATEISAVVTVIDSIS
EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQATVEIQSMIESLQSGSKALSGITGDIVSRAEQGKSAVSLV
GEDVGNIADSINQVFDMASHIAASAEEQSVACREIAAQLAEIRNQSGVISDNAHNALELAHELAQASVALTDILGQYRT
>Mature_479_residues
MKQITFRKIDAILIKFSLNGKFWLVCSMVAAITAVVALANYRLQLATIESASDARVSAALDAYAEIARDNDLQGDALRAF
ATRHGLSQSGQSGRKGNTVTAVTNLDGSLLALSRNVADWESESRSDASMMLWWAALGLLPLFQLSYWMSTSLGGGLWDMY
MAIKRLADGDLTQRLNFFGTDDFSLIAREIDRCADNMSDMLSAIRNNADTLKRASSAFSNQAQSSDSLARRQHEFLDSVA
VAMSQMTSAIEEVSANASATSTQTRSNAGAVKESQKRITNTVSGIAELSGKIGDASSSVDALSREATEISAVVTVIDSIS
EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQATVEIQSMIESLQSGSKALSGITGDIVSRAEQGKSAVSLV
GEDVGNIADSINQVFDMASHIAASAEEQSVACREIAAQLAEIRNQSGVISDNAHNALELAHELAQASVALTDILGQYRT

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=280, Percent_Identity=31.4285714285714, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI2367378, Length=315, Percent_Identity=29.2063492063492, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787690, Length=280, Percent_Identity=31.4285714285714, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788194, Length=337, Percent_Identity=29.3768545994065, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789453, Length=194, Percent_Identity=36.0824742268041, Blast_Score=90, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 50919; Mature: 50919

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQITFRKIDAILIKFSLNGKFWLVCSMVAAITAVVALANYRLQLATIESASDARVSAAL
CCCCHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
DAYAEIARDNDLQGDALRAFATRHGLSQSGQSGRKGNTVTAVTNLDGSLLALSRNVADWE
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCHHHHC
SESRSDASMMLWWAALGLLPLFQLSYWMSTSLGGGLWDMYMAIKRLADGDLTQRLNFFGT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
DDFSLIAREIDRCADNMSDMLSAIRNNADTLKRASSAFSNQAQSSDSLARRQHEFLDSVA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VAMSQMTSAIEEVSANASATSTQTRSNAGAVKESQKRITNTVSGIAELSGKIGDASSSVD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ALSREATEISAVVTVIDSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQ
HHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCHH
ATVEIQSMIESLQSGSKALSGITGDIVSRAEQGKSAVSLVGEDVGNIADSINQVFDMASH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAASAEEQSVACREIAAQLAEIRNQSGVISDNAHNALELAHELAQASVALTDILGQYRT
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQITFRKIDAILIKFSLNGKFWLVCSMVAAITAVVALANYRLQLATIESASDARVSAAL
CCCCHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
DAYAEIARDNDLQGDALRAFATRHGLSQSGQSGRKGNTVTAVTNLDGSLLALSRNVADWE
HHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHCCHHHHC
SESRSDASMMLWWAALGLLPLFQLSYWMSTSLGGGLWDMYMAIKRLADGDLTQRLNFFGT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCC
DDFSLIAREIDRCADNMSDMLSAIRNNADTLKRASSAFSNQAQSSDSLARRQHEFLDSVA
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VAMSQMTSAIEEVSANASATSTQTRSNAGAVKESQKRITNTVSGIAELSGKIGDASSSVD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ALSREATEISAVVTVIDSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLAGRTQQ
HHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCHH
ATVEIQSMIESLQSGSKALSGITGDIVSRAEQGKSAVSLVGEDVGNIADSINQVFDMASH
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAASAEEQSVACREIAAQLAEIRNQSGVISDNAHNALELAHELAQASVALTDILGQYRT
HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11390693 [H]