Click here to switch to the map view.

The map label for this gene is cspG [H]

Identifier: 119775095

GI number: 119775095

Start: 2389189

End: 2389401

Strand: Direct

Name: cspG [H]

Synonym: Sama_1960

Alternate gene names: 119775095

Gene position: 2389189-2389401 (Clockwise)

Preceding gene: 119775090

Following gene: 119775101

Centisome position: 55.48

GC content: 47.89

Gene sequence:

>213_bases
ATGTCGGCCCCACAGCACACTGGTACAGTAAAATGGTTTAACGACGAGAAAGGTTTTGGCTTCCTGAGTCGCGATAATGA
TTCAGATGTATTTGTTCACTACCGCGCTATCAATACTCAGGGAAGACGCACTTTAAAAGAAGGTCAAAAAGTCAGCTTCA
GCCTGGTTGAAGGCCAAAAGGGCCTCCTGGCAGCAAACGTCACGCCACTGTGA

Upstream 100 bases:

>100_bases
CACTATAACTCTAGCTGCAAATTCCTGTCAGGGCTGTCAATTGACTGAAATATCTGCTTGTTAAAGTTCAGATACATTAT
CAATCCCTTACGAGGTTAAC

Downstream 100 bases:

>100_bases
TCAGGGCGCCAGGCGCTCAATATCCCAACCCGCCGCCGTTTTTTCATAAATAAAGCGGTCGTGCAGCCTGTGTTCCCCGC
CCTGCCAGAACTCAATACTG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSAPQHTGTVKWFNDEKGFGFLSRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKGLLAANVTPL

Sequences:

>Translated_70_residues
MSAPQHTGTVKWFNDEKGFGFLSRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKGLLAANVTPL
>Mature_69_residues
SAPQHTGTVKWFNDEKGFGFLSRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKGLLAANVTPL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=50, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=50, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=50, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=56.7164179104478, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=58.4615384615385, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=56.25, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=59.375, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=50.7692307692308, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=48.4375, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7797; Mature: 7666

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPQHTGTVKWFNDEKGFGFLSRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQK
CCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEEEECCCCCHHCCCCCEEEEEEECCCC
GLLAANVTPL
CEEEECCCCC
>Mature Secondary Structure 
SAPQHTGTVKWFNDEKGFGFLSRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQK
CCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEEEECCCCCHHCCCCCEEEEEEECCCC
GLLAANVTPL
CEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]