| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775073
Identifier: 119775073
GI number: 119775073
Start: 2365343
End: 2365636
Strand: Reverse
Name: 119775073
Synonym: Sama_1938
Alternate gene names: NA
Gene position: 2365636-2365343 (Counterclockwise)
Preceding gene: 119775074
Following gene: 119775072
Centisome position: 54.94
GC content: 55.44
Gene sequence:
>294_bases ATGGTGATTAACGCTGCACAAATTGCGTTTTTTGGGGCAAGTGCCCTAATACCGCGCGCTTTGCCTGCGTCTTCACCCCA AGGTGACGAAAGCCTTGAGCAGTCCCCCAGCGTTATCGGCGCGCAGGCAAGCACACTCATGGCGGCCTGGGATAGCGGAT TCACGCCTAATCAACAGCTTAACTATGATGAAACGCCCCAAAGCCGCGGCGCCATTGCTGAGTATTTGTTAACTCAGCAC GGCGAGCGGCGGGATCAAATCCGTGCCATGGTCGGCATAGATCTCTATGCCTGA
Upstream 100 bases:
>100_bases GGCTGCACACCAGTGTGGATGATTTGGCGCCTGTGTATCTGCGCGATACTGTGGCCTGGAAGAAATTGCCCGGCCGGGAA TGAGTTGAGGACTCGCTGAT
Downstream 100 bases:
>100_bases CATCAAAAAAGTGAATCTAACCTCTGAGCGTACTGCCATAAGCCCTCATCCCGGACGTGGTGTATTCCTGCTGGAACTGG CTGTCGCAGCTTTTATCACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 97; Mature: 97
Protein sequence:
>97_residues MVINAAQIAFFGASALIPRALPASSPQGDESLEQSPSVIGAQASTLMAAWDSGFTPNQQLNYDETPQSRGAIAEYLLTQH GERRDQIRAMVGIDLYA
Sequences:
>Translated_97_residues MVINAAQIAFFGASALIPRALPASSPQGDESLEQSPSVIGAQASTLMAAWDSGFTPNQQLNYDETPQSRGAIAEYLLTQH GERRDQIRAMVGIDLYA >Mature_97_residues MVINAAQIAFFGASALIPRALPASSPQGDESLEQSPSVIGAQASTLMAAWDSGFTPNQQLNYDETPQSRGAIAEYLLTQH GERRDQIRAMVGIDLYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10395; Mature: 10395
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVINAAQIAFFGASALIPRALPASSPQGDESLEQSPSVIGAQASTLMAAWDSGFTPNQQL CCCCCHHHHHHCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC NYDETPQSRGAIAEYLLTQHGERRDQIRAMVGIDLYA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEECC >Mature Secondary Structure MVINAAQIAFFGASALIPRALPASSPQGDESLEQSPSVIGAQASTLMAAWDSGFTPNQQL CCCCCHHHHHHCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCC NYDETPQSRGAIAEYLLTQHGERRDQIRAMVGIDLYA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA