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The map label for this gene is recD [H]

Identifier: 119775037

GI number: 119775037

Start: 2325741

End: 2327636

Strand: Direct

Name: recD [H]

Synonym: Sama_1902

Alternate gene names: 119775037

Gene position: 2325741-2327636 (Clockwise)

Preceding gene: 119775036

Following gene: 119775038

Centisome position: 54.01

GC content: 56.86

Gene sequence:

>1896_bases
ATGATAGAACTTTCAGGCAAGCCCTGTAGCAGTGATGCCCTCAAAGCGCAGCTCAAACTGTGGCAATCACAGGGAGAGCT
GTCGGCACTGGATCGCCACTTTGCCCTGCAGATGGCCGAGCTTCACAGTGACGATTCACCGTTGATGCTGCTGATGTGCG
TGTTGGTGTCACGGCAGCTTTCCCGTCAGCATCCCTGTCTTGACTTAAGCGCATTGATGCTTGGCAACCCAATGGGCACC
CGTCAGGCGCAGCTGCGCATTCTGGCTGATTACCCTGCACTGTTGGGTGCCGTTGCCAATCTCGATGCCGTTGGCAGCCC
GGATGAAAACAAGCCACTGATTTTAGAAGGCAAACGTCTCTACCTTAAGCGCTATCAAGGCTTTGAGAGCCGGGTCGCGG
CGCGGCTTAATGCCATGGCTGGAACTGAGCTCAGTACTCATGCCCACACGGCGGCGCTGCTGGAGGCGCTGTTCCCGGTA
GGCAAAGAGGCTATCGACTGGCAAAAAATCGCGGTGGCCACCGCCGCAGGAAAGCAGCTGACTGTCATCACCGGCGGCCC
CGGCACGGGTAAAACCACCACGGTGACCAAGTTACTGCTGCTCTTGTCGCTGTCATCCTCATTGAATATTCGCATGGTGG
CGCCCACGGGCAAGGCCGCTGCCAGACTGTCGGAGTCCATCAAAGCCAGTAAGCAGCGACTGACTCAGGAGTTAAACTCG
CCCCTTATCTCCCAGGACGCCATTGCAAGCCTGCCGGAAGATGCCTCGACCCTTCACCGTCTGCTTGGCTTTCAACCTGG
CAACCACAAATTTCGCCATCACAGAGACAATCCGCTGGATTTGGACTTATTGCTGGTGGATGAGGCCTCCATGGTGGATT
TACCCATGATGGACAGGCTGCTTGATGCCCTGCCAGGCCATGCCCGGCTCATTTTGCTGGGCGATCAGGATCAGCTCGCT
TCAGTGGAAGCCGGTGCAGTGCTTGCTGATATTTGTGAAGGCGCGCGCCAGGGTTACCGCTACAGCGCGGTACAAACCGC
ACGCATCGAGGGGCTCACAGGCACAAAGCTTGCCCCACGCGCAGACGCCCCCGGGCTTGGCGATAACCTGTGCCGACTGC
TGCATAGCCACAGATTTGCCGAAGACGCCGGTATTGGGCAGCTCGCCATGGCGGTAAATGAAGGCGACAAAGAGAAAGTC
GCTGCTGTGTGGCAAAAAAACTACGCAGAGCTGAGCTGGATCCCGGGTGATAACAGTGATGGGCTCGCAGCCTTGGTGCA
ACTGGCCAAATCCGCCTACAGCGAGTATTTACAGGCGATGAAACAGCAGGCCGAGCCTAAAACCATACTGCAAAAGTACA
ATGAATTTCGGGTACTCTGCGCCATGAAAAACGGCGAGTATGGCGTGGATGGTATCAATAGGGCCATTACCGCAGCCCTT
GCCAGAGCCGGACTGATAGAGCCAAGCCAGGAGTTTTATGCAGGCCGCCCGGTCATGATCCAGAGTAACGATTACAGTCT
GGGGCTCTTTAATGGCGACATTGGCATACTGCTTCCGGTAGAGGGGGATAACCAGCGCCTGATGACCCATTTTATTCAAA
GCGATGGCCAGGTGCTTAAAGTCCTGCCGGCGAGACTACCGGGACACGAGACCTGCTACGCCATGACAGTGCACAAGAGC
CAGGGCAGTGAATTTGCCTCGGTGGCACTATCCTTACCGCCACAGCCAACCCCATCCCAACAGAGCTTGATTGGCCGAGA
GCTGATTTACACCGCCATTACCCGGGCCAAGTCGAAGTTTACCTGCCTTGGGACAGAGGCTTTGTTTGAGGCCGCGACAC
AGCGTCGCACCGAGCGGGCGTCGGGGCTGGCAGACCGCTTATGGCATGAGGATTAA

Upstream 100 bases:

>100_bases
TGTCGGCCTCATCTCCCGGCACCGGTGTGTATTTTGACAAGCCGCCCAAGCTATTGATCCAGGCGCTGGACGCCTTGTTT
GAGGGTAAGGAGATACGGCT

Downstream 100 bases:

>100_bases
ATCTCTGTCATCTTCCTTGCGCCCCCCACACGGGCTCATTACACTGCTCCTTTTGCCGGGACAAGTCTTTACGCCGGTTT
TACGTCTTTTGGAGACAAGA

Product: exodeoxyribonuclease V

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 631; Mature: 631

Protein sequence:

>631_residues
MIELSGKPCSSDALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSALMLGNPMGT
RQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRLYLKRYQGFESRVAARLNAMAGTELSTHAHTAALLEALFPV
GKEAIDWQKIAVATAAGKQLTVITGGPGTGKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNS
PLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLDALPGHARLILLGDQDQLA
SVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPRADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKV
AAVWQKNYAELSWIPGDNSDGLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL
ARAGLIEPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLKVLPARLPGHETCYAMTVHKS
QGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKFTCLGTEALFEAATQRRTERASGLADRLWHED

Sequences:

>Translated_631_residues
MIELSGKPCSSDALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSALMLGNPMGT
RQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRLYLKRYQGFESRVAARLNAMAGTELSTHAHTAALLEALFPV
GKEAIDWQKIAVATAAGKQLTVITGGPGTGKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNS
PLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLDALPGHARLILLGDQDQLA
SVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPRADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKV
AAVWQKNYAELSWIPGDNSDGLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL
ARAGLIEPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLKVLPARLPGHETCYAMTVHKS
QGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKFTCLGTEALFEAATQRRTERASGLADRLWHED
>Mature_631_residues
MIELSGKPCSSDALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSALMLGNPMGT
RQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRLYLKRYQGFESRVAARLNAMAGTELSTHAHTAALLEALFPV
GKEAIDWQKIAVATAAGKQLTVITGGPGTGKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNS
PLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLDALPGHARLILLGDQDQLA
SVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPRADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKV
AAVWQKNYAELSWIPGDNSDGLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL
ARAGLIEPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLKVLPARLPGHETCYAMTVHKS
QGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKFTCLGTEALFEAATQRRTERASGLADRLWHED

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=625, Percent_Identity=44.8, Blast_Score=437, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 68400; Mature: 68400

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELSGKPCSSDALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQL
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SRQHPCLDLSALMLGNPMGTRQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRL
HHCCCCCCHHHHHHCCCCCCCHHHEEEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECHHH
YLKRYQGFESRVAARLNAMAGTELSTHAHTAALLEALFPVGKEAIDWQKIAVATAAGKQL
HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHEEEEECCCEE
TVITGGPGTGKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNS
EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
PLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRL
CCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LDALPGHARLILLGDQDQLASVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPR
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEHEEEEEECCCCCCCCCCC
ADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWIPGDNSD
CCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCC
GLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHH
ARAGLIEPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLK
HHHCCCCCCHHHHCCCCEEEECCCEEEEEEECCEEEEEEECCCCHHHHHHHHHCCCCEEE
VLPARLPGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKF
EECCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE
TCLGTEALFEAATQRRTERASGLADRLWHED
EEECHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MIELSGKPCSSDALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQL
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SRQHPCLDLSALMLGNPMGTRQAQLRILADYPALLGAVANLDAVGSPDENKPLILEGKRL
HHCCCCCCHHHHHHCCCCCCCHHHEEEEEHHHHHHHHHHCCCCCCCCCCCCCEEEECHHH
YLKRYQGFESRVAARLNAMAGTELSTHAHTAALLEALFPVGKEAIDWQKIAVATAAGKQL
HHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHEEEEECCCEE
TVITGGPGTGKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNS
EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
PLISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRL
CCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
LDALPGHARLILLGDQDQLASVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPR
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEHEEEEEECCCCCCCCCCC
ADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWIPGDNSD
CCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCC
GLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEEEEEECCCCCCCHHHHHHHHHH
ARAGLIEPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLK
HHHCCCCCCHHHHCCCCEEEECCCEEEEEEECCEEEEEEECCCCHHHHHHHHHCCCCEEE
VLPARLPGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKF
EECCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE
TCLGTEALFEAATQRRTERASGLADRLWHED
EEECHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]