Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774999

Identifier: 119774999

GI number: 119774999

Start: 2271746

End: 2274037

Strand: Reverse

Name: 119774999

Synonym: Sama_1864

Alternate gene names: NA

Gene position: 2274037-2271746 (Counterclockwise)

Preceding gene: 119775000

Following gene: 119774998

Centisome position: 52.81

GC content: 57.85

Gene sequence:

>2292_bases
ATGCGCTGGCTTGGTGTATGGCTGCCTAATTGGGAGCTGGATTACCTGCGCCATGTGCAGGGGCTGGCGCTATCCATGCC
ACTTATTCTGTACGATGTGGCAAAGGCACGGGTGCTCAAAGCCTGTCCGCAGGCGGCCAGTGCCGGGGTCATGGCCGGTC
AGAGCATGGGCAGTGCGGCGCAGCTGTGCCCGGAGGTGCAACCCTTCCCCTTTGATCTCTCGCTGCACCGACAAGGCAGC
GATTGGCTGTGCCGCCACGGCTACAGTTTCAGCGCCCGTCTGGTGCCGCCCCCTGAGCCCGATACACTTTTTGCCCGTTG
CCACGATGTGCTTTTGCTTGAAACGGGCTCCATGGCGAAGCTTTTTGGTGGCGAAGCGGCGCTGGCAAAGGCATTGGCAG
CTGCCCTTGAAGGGCTTAACTGCAGCTTTGCCATGGCCTTTGCTGCCACGCCGTTGGCGGCAGGTGTGCTGGCCAAAGCC
CAGCCCTGTCTGGTATCAAAGACGCTGCAGCCAATGTTTGCCAAGGCTGCAACATTGCAATCGGCTCTCAAGGTTTCAGC
TTCAAAATCAGCATCAAAAGCGATTGCTGAGCCCAAAAGTGCAGCTGAGGATTTATCACGGCAATTATCGGCGCTGCCAA
TCTCCACTCTGCCTGTGCCCGAGGCGCTGTTATCCCGTTTGGAGGGGATGGGACTTGAGCATATAGGTGCGCTGCAGGCT
TTACCCGCTGCCGAGCTTGGGATCCGTTTTGGTCCCGAATTCGTGTTGCTATTGGCGAGGCTTAACGGTAATCAGCCCCA
TCCTCAGAGTTTTTACTGCCCGCAGGAAGAGTATTGTCAGCGGATTGAGCTGATGTATGAGGCCGAAAGCCTCAATGCCC
TGGTGTTTGTGCTTGGGCGTATGTTTGCCGAGCTGGCGCTGTTTTTACGTCAGCGACAGTTGGCGGTTTCCATGCTGGAG
CTGGTACTGCATTACCGGGTATCTGAGTGGATGAACCATGGGGAAAAGGGGCAGAAAGGGAGCAAACGATTTTCTGCAAA
AGCTTCTTGTACAAAGGCCTCTTTCTCAGCCGCTTCGCCAGCAGTCCGGGGCAGCGTAGCGGGCCGTTTGGGGGGCAGGA
TTGATGGGCGCTCCAAAGTAGAAGGAGTGCAGGAGGAGATAGTATCTGAGCAAACCACAGATGTTGTGGATGTAGTTCAT
GAAGCGCGCTTGCCGCTGGCATACCCCTTTGCTGAATACACGACCGATGGCCTGTTGGCCCTGTGCCGTTTGCAGCTGGA
GCGCTTTACGCTGGCGGCTCCGGTGGTGGCGCTAACACTGCACCGCTGCCACTTTGTCCCTAGAAGCGCGCCACCGGCAG
GCGCCATCGACAATAGCCATAGAGCAAGTCTCAGTTTGCTGGCCCGGCTTGAGGCCCGGCTGGGGGAAGACAGGGTAAAG
CGTCTCGGTGCCAGACAAGCGCTCTTGCCGGAGCACAGTTTTTGCCTGCAGCCGATGTCAGCACCTGTGGCGGTTACCTA
TAGGGCTTTGCCTGTCTCATCGTTATCTGTCTCATATTTGTCTGCCGAGTCTTCACGTCAGCAGCCAAAACCGATCCCAC
GTAAATCGGCTGCGCCGTTATTGCTAACCAAGCCAGCACAGCAACGCGTTGCAGCTGCCGGTATCCCTCCGGCACCAGAT
AAAAAAGCCGCCAACCCGGCCGCGGCTTCGAACGTCATCCGTACCGCCTTTAGCCTCCCGGCTGCTCATGTCGGTAACAC
AGCGACCATGACTGAAATGGATGGGGCGAATGATGATTCGATGGCTGGAGCCATAGCGCCGCGATTCGCTTCAGACATAA
CTGATAAGGACTTAGCAGTTACGGGCTTAGCCGCGACTAACGAGCCCTTTACCAACAAAGCTGCAACTGCCGGAATGGAA
CTGTGCGAGACAGTGGCAAAAGCCGCAGCAACCAGTAAGCCTGTGGCCACACAGGATGCTGCCACAGAAGGACTGTCACT
TGCCTGCCGCCCGCCCTGGCTTTTGGTGGCGCCAGAAGCGATTGCAGAAACTGATGTTGAGCTCTTGCGCGGCCCCGAGC
GGCTGCGTGAGCCCTGGTGGCATGGCAGCCAAACCATGGCGGCTCAAAGCACAACTGAGCTTGAGACAGGCCAGGTAAAC
GAGAGTTTGCCAAGCGGGAAACCCAGAGGCGCGGCGCGGGACTATTACCTTGCCCGCCACCATGAAGGTGGCCTGTGCTG
GGTGTTTCGCCGTGAGGGCGAGCCCGGACTTTACTTGCAGGGCTGGTTTTGA

Upstream 100 bases:

>100_bases
TTCAGCAAAGCCTGTGTTTGCATCAGAGCCAGTTCGCCCAGCGGCACTGCTGTTTGGCCCGCGGGCTGAGGCGTTATCAA
TCTGTTTGGGTTAAGGGTTG

Downstream 100 bases:

>100_bases
TGTACGCCGAGCTACATGCCATCAGCAACTACAGCTTTTTACGGGGCGCGTCGCACCCCCACGAGCTGGTGGCCGAGGCG
GCGCGGCTTGGCTACAGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MRWLGVWLPNWELDYLRHVQGLALSMPLILYDVAKARVLKACPQAASAGVMAGQSMGSAAQLCPEVQPFPFDLSLHRQGS
DWLCRHGYSFSARLVPPPEPDTLFARCHDVLLLETGSMAKLFGGEAALAKALAAALEGLNCSFAMAFAATPLAAGVLAKA
QPCLVSKTLQPMFAKAATLQSALKVSASKSASKAIAEPKSAAEDLSRQLSALPISTLPVPEALLSRLEGMGLEHIGALQA
LPAAELGIRFGPEFVLLLARLNGNQPHPQSFYCPQEEYCQRIELMYEAESLNALVFVLGRMFAELALFLRQRQLAVSMLE
LVLHYRVSEWMNHGEKGQKGSKRFSAKASCTKASFSAASPAVRGSVAGRLGGRIDGRSKVEGVQEEIVSEQTTDVVDVVH
EARLPLAYPFAEYTTDGLLALCRLQLERFTLAAPVVALTLHRCHFVPRSAPPAGAIDNSHRASLSLLARLEARLGEDRVK
RLGARQALLPEHSFCLQPMSAPVAVTYRALPVSSLSVSYLSAESSRQQPKPIPRKSAAPLLLTKPAQQRVAAAGIPPAPD
KKAANPAAASNVIRTAFSLPAAHVGNTATMTEMDGANDDSMAGAIAPRFASDITDKDLAVTGLAATNEPFTNKAATAGME
LCETVAKAAATSKPVATQDAATEGLSLACRPPWLLVAPEAIAETDVELLRGPERLREPWWHGSQTMAAQSTTELETGQVN
ESLPSGKPRGAARDYYLARHHEGGLCWVFRREGEPGLYLQGWF

Sequences:

>Translated_763_residues
MRWLGVWLPNWELDYLRHVQGLALSMPLILYDVAKARVLKACPQAASAGVMAGQSMGSAAQLCPEVQPFPFDLSLHRQGS
DWLCRHGYSFSARLVPPPEPDTLFARCHDVLLLETGSMAKLFGGEAALAKALAAALEGLNCSFAMAFAATPLAAGVLAKA
QPCLVSKTLQPMFAKAATLQSALKVSASKSASKAIAEPKSAAEDLSRQLSALPISTLPVPEALLSRLEGMGLEHIGALQA
LPAAELGIRFGPEFVLLLARLNGNQPHPQSFYCPQEEYCQRIELMYEAESLNALVFVLGRMFAELALFLRQRQLAVSMLE
LVLHYRVSEWMNHGEKGQKGSKRFSAKASCTKASFSAASPAVRGSVAGRLGGRIDGRSKVEGVQEEIVSEQTTDVVDVVH
EARLPLAYPFAEYTTDGLLALCRLQLERFTLAAPVVALTLHRCHFVPRSAPPAGAIDNSHRASLSLLARLEARLGEDRVK
RLGARQALLPEHSFCLQPMSAPVAVTYRALPVSSLSVSYLSAESSRQQPKPIPRKSAAPLLLTKPAQQRVAAAGIPPAPD
KKAANPAAASNVIRTAFSLPAAHVGNTATMTEMDGANDDSMAGAIAPRFASDITDKDLAVTGLAATNEPFTNKAATAGME
LCETVAKAAATSKPVATQDAATEGLSLACRPPWLLVAPEAIAETDVELLRGPERLREPWWHGSQTMAAQSTTELETGQVN
ESLPSGKPRGAARDYYLARHHEGGLCWVFRREGEPGLYLQGWF
>Mature_763_residues
MRWLGVWLPNWELDYLRHVQGLALSMPLILYDVAKARVLKACPQAASAGVMAGQSMGSAAQLCPEVQPFPFDLSLHRQGS
DWLCRHGYSFSARLVPPPEPDTLFARCHDVLLLETGSMAKLFGGEAALAKALAAALEGLNCSFAMAFAATPLAAGVLAKA
QPCLVSKTLQPMFAKAATLQSALKVSASKSASKAIAEPKSAAEDLSRQLSALPISTLPVPEALLSRLEGMGLEHIGALQA
LPAAELGIRFGPEFVLLLARLNGNQPHPQSFYCPQEEYCQRIELMYEAESLNALVFVLGRMFAELALFLRQRQLAVSMLE
LVLHYRVSEWMNHGEKGQKGSKRFSAKASCTKASFSAASPAVRGSVAGRLGGRIDGRSKVEGVQEEIVSEQTTDVVDVVH
EARLPLAYPFAEYTTDGLLALCRLQLERFTLAAPVVALTLHRCHFVPRSAPPAGAIDNSHRASLSLLARLEARLGEDRVK
RLGARQALLPEHSFCLQPMSAPVAVTYRALPVSSLSVSYLSAESSRQQPKPIPRKSAAPLLLTKPAQQRVAAAGIPPAPD
KKAANPAAASNVIRTAFSLPAAHVGNTATMTEMDGANDDSMAGAIAPRFASDITDKDLAVTGLAATNEPFTNKAATAGME
LCETVAKAAATSKPVATQDAATEGLSLACRPPWLLVAPEAIAETDVELLRGPERLREPWWHGSQTMAAQSTTELETGQVN
ESLPSGKPRGAARDYYLARHHEGGLCWVFRREGEPGLYLQGWF

Specific function: Unknown

COG id: COG0389

COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81819; Mature: 81819

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWLGVWLPNWELDYLRHVQGLALSMPLILYDVAKARVLKACPQAASAGVMAGQSMGSAA
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHCCCCCCCHH
QLCPEVQPFPFDLSLHRQGSDWLCRHGYSFSARLVPPPEPDTLFARCHDVLLLETGSMAK
HHCCCCCCCCCCEEEECCCCCHHHHCCCCCEEEECCCCCCCHHHHHHCEEEEECCCCHHH
LFGGEAALAKALAAALEGLNCSFAMAFAATPLAAGVLAKAQPCLVSKTLQPMFAKAATLQ
HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SALKVSASKSASKAIAEPKSAAEDLSRQLSALPISTLPVPEALLSRLEGMGLEHIGALQA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
LPAAELGIRFGPEFVLLLARLNGNQPHPQSFYCPQEEYCQRIELMYEAESLNALVFVLGR
CCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MFAELALFLRQRQLAVSMLELVLHYRVSEWMNHGEKGQKGSKRFSAKASCTKASFSAASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCC
AVRGSVAGRLGGRIDGRSKVEGVQEEIVSEQTTDVVDVVHEARLPLAYPFAEYTTDGLLA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
LCRLQLERFTLAAPVVALTLHRCHFVPRSAPPAGAIDNSHRASLSLLARLEARLGEDRVK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
RLGARQALLPEHSFCLQPMSAPVAVTYRALPVSSLSVSYLSAESSRQQPKPIPRKSAAPL
HHCCHHHCCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCHHHCCCCCCCCCCCCCCE
LLTKPAQQRVAAAGIPPAPDKKAANPAAASNVIRTAFSLPAAHVGNTATMTEMDGANDDS
EEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCC
MAGAIAPRFASDITDKDLAVTGLAATNEPFTNKAATAGMELCETVAKAAATSKPVATQDA
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ATEGLSLACRPPWLLVAPEAIAETDVELLRGPERLREPWWHGSQTMAAQSTTELETGQVN
HHCCCEEEECCCEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCCCCCCCCCC
ESLPSGKPRGAARDYYLARHHEGGLCWVFRREGEPGLYLQGWF
CCCCCCCCCCCCCCCHHEEECCCCEEEEEEECCCCCEEEECCC
>Mature Secondary Structure
MRWLGVWLPNWELDYLRHVQGLALSMPLILYDVAKARVLKACPQAASAGVMAGQSMGSAA
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHCCCCCCCHH
QLCPEVQPFPFDLSLHRQGSDWLCRHGYSFSARLVPPPEPDTLFARCHDVLLLETGSMAK
HHCCCCCCCCCCEEEECCCCCHHHHCCCCCEEEECCCCCCCHHHHHHCEEEEECCCCHHH
LFGGEAALAKALAAALEGLNCSFAMAFAATPLAAGVLAKAQPCLVSKTLQPMFAKAATLQ
HHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
SALKVSASKSASKAIAEPKSAAEDLSRQLSALPISTLPVPEALLSRLEGMGLEHIGALQA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
LPAAELGIRFGPEFVLLLARLNGNQPHPQSFYCPQEEYCQRIELMYEAESLNALVFVLGR
CCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MFAELALFLRQRQLAVSMLELVLHYRVSEWMNHGEKGQKGSKRFSAKASCTKASFSAASP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHCCCCCC
AVRGSVAGRLGGRIDGRSKVEGVQEEIVSEQTTDVVDVVHEARLPLAYPFAEYTTDGLLA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHH
LCRLQLERFTLAAPVVALTLHRCHFVPRSAPPAGAIDNSHRASLSLLARLEARLGEDRVK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHH
RLGARQALLPEHSFCLQPMSAPVAVTYRALPVSSLSVSYLSAESSRQQPKPIPRKSAAPL
HHCCHHHCCCCHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCHHHCCCCCCCCCCCCCCE
LLTKPAQQRVAAAGIPPAPDKKAANPAAASNVIRTAFSLPAAHVGNTATMTEMDGANDDS
EEECCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCC
MAGAIAPRFASDITDKDLAVTGLAATNEPFTNKAATAGMELCETVAKAAATSKPVATQDA
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ATEGLSLACRPPWLLVAPEAIAETDVELLRGPERLREPWWHGSQTMAAQSTTELETGQVN
HHCCCEEEECCCEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHCCCCCCCCCCCC
ESLPSGKPRGAARDYYLARHHEGGLCWVFRREGEPGLYLQGWF
CCCCCCCCCCCCCCCHHEEECCCCEEEEEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA