| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774932
Identifier: 119774932
GI number: 119774932
Start: 2190129
End: 2190329
Strand: Direct
Name: 119774932
Synonym: Sama_1797
Alternate gene names: NA
Gene position: 2190129-2190329 (Clockwise)
Preceding gene: 119774931
Following gene: 119774933
Centisome position: 50.86
GC content: 48.76
Gene sequence:
>201_bases ATGAGTATCATCTACATCCTCATTCCCATTGCCATGTTGTTTGTGCTGATTGCAGTCGGGGTCTTTTTTTGGGCTGTCCG AACCGAACAATTCGACGATCTAGACCGCCAGGGCGCGTCAATCCTGTTTGAAGAAGAAACCCCTAAAGCGCCACTCTCTG GCAAGTCTTCTTCAAACAACAATGAAGCGGACAAGCGCTGA
Upstream 100 bases:
>100_bases CCGTCACCGGCCATGTTGTACCCTATATCGCGGCCATAGGCATGTCTGCCAGTTCCCTGATTGTGGTGGGTAACAGCCTG AGGCTACTGAGGTTAAAACC
Downstream 100 bases:
>100_bases TGGACTACAGCCTTTCAGGCGCCTTTTTGGTCGGATTGATGGGCGGAGTTCACTGCTTTGGCATGTGTGGCGGCCTGTTG GGTGCCTTTTCCAGCCAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome Oxidase Maturation Protein Cbb3- Type; Cytochrome Oxidase Maturation -Type; FixS-Like Protein; Cbb3-Type Cytochrome C Oxidase Maturation Protein
Number of amino acids: Translated: 66; Mature: 65
Protein sequence:
>66_residues MSIIYILIPIAMLFVLIAVGVFFWAVRTEQFDDLDRQGASILFEEETPKAPLSGKSSSNNNEADKR
Sequences:
>Translated_66_residues MSIIYILIPIAMLFVLIAVGVFFWAVRTEQFDDLDRQGASILFEEETPKAPLSGKSSSNNNEADKR >Mature_65_residues SIIYILIPIAMLFVLIAVGVFFWAVRTEQFDDLDRQGASILFEEETPKAPLSGKSSSNNNEADKR
Specific function: Unknown
COG id: COG3197
COG function: function code P; Uncharacterized protein, possibly involved in nitrogen fixation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7405; Mature: 7273
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIIYILIPIAMLFVLIAVGVFFWAVRTEQFDDLDRQGASILFEEETPKAPLSGKSSSNN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC NEADKR CCCCCC >Mature Secondary Structure SIIYILIPIAMLFVLIAVGVFFWAVRTEQFDDLDRQGASILFEEETPKAPLSGKSSSNN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC NEADKR CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA