Click here to switch to the map view.

The map label for this gene is infC [H]

Identifier: 119774901

GI number: 119774901

Start: 2161594

End: 2162046

Strand: Direct

Name: infC [H]

Synonym: Sama_1766

Alternate gene names: 119774901

Gene position: 2161594-2162046 (Clockwise)

Preceding gene: 119774900

Following gene: 119774902

Centisome position: 50.2

GC content: 47.02

Gene sequence:

>453_bases
TTGGATGGAGAATCCATCGGTATTGTCAGTATCCGTGAAGCTCAGGAGTTGGCCGATGAAGCCGGCGTTGATCTCGTAGA
GATCAGCCCCAATGCCGAGCCTCCCGTATGTCGTATAATGGACTACGGTAAATTCCTGTTCGACAAGGCTAAAGCCCAGA
AAGAACAGAAGAAAAAGCAAAAACAGGTTCAGGTTAAGGAAATCAAATTCCGTCCTGGAACTGATGAAAACGACTATCAG
GTAAAACTACGCAACCTGATTCGTTTCCTTGAAGACGGTGACAAAGCGAAAGTTACGCTGCGTTTCCGGGGTCGCGAAAT
GGCACACCAAAACCTGGGTATGGATCTGATGAACCGTATCAAGGCTGATTTGGAAGAGTATGCGGTTGTCGAATCCTTCC
CGAAAATGGAAGGTCGTCAAGCAATTATGGTGCTGGCACCCAAAAAGAAATAG

Upstream 100 bases:

>100_bases
GGAGGAATAGGTCATAAAGATCAAGAAAGCAGGGCGTCAGCCGGCCCCAAACCGTATCAACGATGAAATCACCGGTGTTC
CACAGGTACGTTTAACCGGA

Downstream 100 bases:

>100_bases
TAGGGCTTTTGAAAGTAACGGCCGCCCTGCAAAGAGCGGCCGTTCGCCTTACGTTTTTTAATAAACCCCCAATGCGGAGT
TAGAAGTAATGCCAAAAATG

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MDGESIGIVSIREAQELADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQ
VKLRNLIRFLEDGDKAKVTLRFRGREMAHQNLGMDLMNRIKADLEEYAVVESFPKMEGRQAIMVLAPKKK

Sequences:

>Translated_150_residues
MDGESIGIVSIREAQELADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQ
VKLRNLIRFLEDGDKAKVTLRFRGREMAHQNLGMDLMNRIKADLEEYAVVESFPKMEGRQAIMVLAPKKK
>Mature_150_residues
MDGESIGIVSIREAQELADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQ
VKLRNLIRFLEDGDKAKVTLRFRGREMAHQNLGMDLMNRIKADLEEYAVVESFPKMEGRQAIMVLAPKKK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=151, Percent_Identity=79.4701986754967, Blast_Score=227, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 17198; Mature: 17198

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGESIGIVSIREAQELADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQ
CCCCCEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KQVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKVTLRFRGREMAHQNLGMDLMNRI
HHCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHH
KADLEEYAVVESFPKMEGRQAIMVLAPKKK
HHHHHHHHHHHHCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MDGESIGIVSIREAQELADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQ
CCCCCEEEEEHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KQVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKVTLRFRGREMAHQNLGMDLMNRI
HHCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHH
KADLEEYAVVESFPKMEGRQAIMVLAPKKK
HHHHHHHHHHHHCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA