| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774884
Identifier: 119774884
GI number: 119774884
Start: 2139025
End: 2141085
Strand: Reverse
Name: 119774884
Synonym: Sama_1749
Alternate gene names: NA
Gene position: 2141085-2139025 (Counterclockwise)
Preceding gene: 119774886
Following gene: 119774880
Centisome position: 49.72
GC content: 54.49
Gene sequence:
>2061_bases ATGAGCAAGGCTACCCATAATCCAAATTGTTTTAACCAAAGCAACAATACCCCATTTGCCGAGGTGCTGGACCGTCATCT TTCTCGCCGCAACTTTGTAAAAAGCGGTCTGGGCCTTGGCGCCATGACCGCATTTGCGGGTTTGGGCCTCGCAGGCTGTG GCAGTGATTCAAGCCCGGTAACGCCTCCAGTGACCACACCAACACCACTCCCTCCACCAACCCAGTCAGACATCACTCTG GGCTTTGACTCCATTCCCGGTTCGCTCACCGATGGCGTTTCCATTCCCCAAGGCTACAGAGCTCAGGTGCTGGCACCCTG GGGAACCCCGTTGAATGATAAGGCTGCCCCCTGGAAAGACGATGGCAGTAATACGTCGGACGATCAGGCCAATGCAGTGG GGCAGAACCACGACGGTATGCACTTTTTCCCACTGAATGATGCCGCCGACGATGGTCTGCTGTGCATCAACCATGAATAC ATTGAACCAGATGCACTGCATCCAACTGGCCCTAGTGTTGACCCGGTCACGGGCCTTCGCACCATCCTTGATGAAGTGCG CAAGGAAATCAACGCTCACGGCGTGACTGTGGTACGTATCAAACGCACCAATGGCGTATGGGAAGTCATTAAAAACGATC CCCATAACCGCCGTTTTACCGGTGCTACCACATTTGATATGTCAGGCCCTGTTGCATACAGCGATCATCTGGTTACCGCT TTCTCGCCCGATGGCAGTCAGACCCGAGGTACCCTGAACAATTGCGGTAACGGTTCAACCCCTTGGGGCACCTACCTGAC CTGTGAAGAAAACTGGCCAGAATACTTCGTCAACAAAGGCGAAATGTCTGCCGCCAACGCCCGTATCGGTGTTGCAACCA AGGACACCCGCTACGGATGGAACCACTTTGCCGGCCACGATGAAGAGCGGGCAGATGAATTCAGCCGCTTCGACATCACC CCAACCGGAATAAGTGCCCTCTACGATTACCGCAATGAAGCCAATGGTCACGGCTATATCGTTGAAATCGACCCCTACAG TCCTAATCAGCGCGGTATCAAACGTACGGCCCTGGGTCGCTTCCGCCATGAAGGGTGCACCTTCGGTAAACTCGAAGAGG GTAAGCCCGTTGTGTTCTACTCAGGGCACGATTCCCGCTTTGAGTATCTTTACAAGTACGTATCAGATGCACTTTGGTCT GAGGCCGATGCCAACAGCAGCAACCGCATTGCTACCGGTGATAAGTACATGAATGACGGTACCCTCTACGTCGCACGCTT CGATGAGGATGGCCAGGGCGAGTGGTTGCCATTGGTGCCGGGAACTGTCACCACCGATGGCAAAACCCTGGGTGAGCATT TGGGGACACTTGCAGACATCATAGTCAACACTGCAGGAGCAGCCGATCTGGTGGGGGCGACCCCAATGGATCGCCCAGAA TGGTGTGCTGTCGACCCCTTCACCGGCAGTGTGTACCTGACGCTGACAAACAATACCCGACGCACCGAAGCCAATCCGGC CAACCCCCGCTTGAAAAATAGCTTTGGTCACATCATTCGTTGGAATGAAGGCGCCTCTGATACCGAATTCAGTTGGGATA TCTTTGTCTTTGGTTCTCCGGCCAACGGTGACAGTGAAACCAATCTCAGTGGCCTGACCGATGAGAACCAGTTTGCAAGC CCGGACGGCCTGGCATTTGACCCACGTGGCATCATGTGGGTACAAACCGACAACGGAGCCAAGGAAGTGACTGAACACAC CAACGACCAGATGCTGGCTGTGGTGCCCTCCAGGTTGCTCGACGCAGAGGGCAATCAAAAACCACTTCGCGCCGATAACC AAATGGAACTGCGCCGTTTCTTCGTGGGTCCCAACGACTGTGAAGTGACAGGTGTAGCCTTCAGCCCTGATTATCAAAGC CTGTTTGCCAATATCCAGCACCCCGGCAACTGGCCTTACAGTGACGATGCTACCCAGATTACCCCGGCCGGTATTAGCAT CAGGCCAAGGGCAGCCACTGTGGTTATCTCAAAAGTTGATGGCACCGAAGTGGGCGTGTAA
Upstream 100 bases:
>100_bases TTCATTCAATTGTCATACTTAATACACACAAACGTCATTTAACACCACTAACTTGTCGTCTCGAATTAAGCCAATATTAC AATGTCTTATCGGAGCGATC
Downstream 100 bases:
>100_bases ACAGAAATTGGAGCCCGGGTGTCTGAACTGAGCCCCCGGATATCGCTCCCGCCAAAATAAAAAACACCGGACTTGGCCGG TGTTTTTTATTCTTTATTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphatase; Tat Pathway Signal Sequence Domain-Containing Protein; Tat Pathway Signal Sequence Domain Protein; Twin-Arginine Translocation Pathway Signal Protein; UxpB Protein; DTDP-Glucose 4 6-Dehydratase; Twin Arginine Translocation Pathway Signal Protein; DTDP-D-Glucose 4 6-Dehydratase; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Alkaline Phosphatase Family Protein; Exported Protein
Number of amino acids: Translated: 686; Mature: 685
Protein sequence:
>686_residues MSKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPVTPPVTTPTPLPPPTQSDITL GFDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKDDGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEY IEPDALHPTGPSVDPVTGLRTILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTA FSPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGWNHFAGHDEERADEFSRFDIT PTGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGRFRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWS EADANSSNRIATGDKYMNDGTLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPE WCAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSPANGDSETNLSGLTDENQFAS PDGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLLDAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQS LFANIQHPGNWPYSDDATQITPAGISIRPRAATVVISKVDGTEVGV
Sequences:
>Translated_686_residues MSKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPVTPPVTTPTPLPPPTQSDITL GFDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKDDGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEY IEPDALHPTGPSVDPVTGLRTILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTA FSPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGWNHFAGHDEERADEFSRFDIT PTGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGRFRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWS EADANSSNRIATGDKYMNDGTLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPE WCAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSPANGDSETNLSGLTDENQFAS PDGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLLDAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQS LFANIQHPGNWPYSDDATQITPAGISIRPRAATVVISKVDGTEVGV >Mature_685_residues SKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPVTPPVTTPTPLPPPTQSDITLG FDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKDDGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEYI EPDALHPTGPSVDPVTGLRTILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTAF SPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGWNHFAGHDEERADEFSRFDITP TGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGRFRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWSE ADANSSNRIATGDKYMNDGTLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPEW CAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSPANGDSETNLSGLTDENQFASP DGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLLDAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQSL FANIQHPGNWPYSDDATQITPAGISIRPRAATVVISKVDGTEVGV
Specific function: Unknown
COG id: COG3211
COG function: function code R; Predicted phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74667; Mature: 74536
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPV CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCC TPPVTTPTPLPPPTQSDITLGFDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKD CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC DGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEYIEPDALHPTGPSVDPVTGLR CCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH TILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTA HHHHHHHHHHCCCCEEEEEEECCCCEEEHCCCCCCCCEECCEEEECCCCCEEECCCEEEE FSPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGW ECCCCCCCCCCHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC NHFAGHDEERADEFSRFDITPTGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGR HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHH FRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWSEADANSSNRIATGDKYMNDG HHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC TLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPE EEEEEEECCCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC WCAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSP EEEECCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEEEEEEEECC ANGDSETNLSGLTDENQFASPDGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLL CCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHCCCCCEEEEECHHHH DAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQSLFANIQHPGNWPYSDDATQI CCCCCCCCCCCCCHHHHHHEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEE TPAGISIRPRAATVVISKVDGTEVGV ECCCEEECCCEEEEEEEECCCCCCCC >Mature Secondary Structure SKATHNPNCFNQSNNTPFAEVLDRHLSRRNFVKSGLGLGAMTAFAGLGLAGCGSDSSPV CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCCCC TPPVTTPTPLPPPTQSDITLGFDSIPGSLTDGVSIPQGYRAQVLAPWGTPLNDKAAPWKD CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC DGSNTSDDQANAVGQNHDGMHFFPLNDAADDGLLCINHEYIEPDALHPTGPSVDPVTGLR CCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH TILDEVRKEINAHGVTVVRIKRTNGVWEVIKNDPHNRRFTGATTFDMSGPVAYSDHLVTA HHHHHHHHHHCCCCEEEEEEECCCCEEEHCCCCCCCCEECCEEEECCCCCEEECCCEEEE FSPDGSQTRGTLNNCGNGSTPWGTYLTCEENWPEYFVNKGEMSAANARIGVATKDTRYGW ECCCCCCCCCCHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCCC NHFAGHDEERADEFSRFDITPTGISALYDYRNEANGHGYIVEIDPYSPNQRGIKRTALGR HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHH FRHEGCTFGKLEEGKPVVFYSGHDSRFEYLYKYVSDALWSEADANSSNRIATGDKYMNDG HHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCC TLYVARFDEDGQGEWLPLVPGTVTTDGKTLGEHLGTLADIIVNTAGAADLVGATPMDRPE EEEEEEECCCCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC WCAVDPFTGSVYLTLTNNTRRTEANPANPRLKNSFGHIIRWNEGASDTEFSWDIFVFGSP EEEECCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEEEEEEEECC ANGDSETNLSGLTDENQFASPDGLAFDPRGIMWVQTDNGAKEVTEHTNDQMLAVVPSRLL CCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHCCCCCEEEEECHHHH DAEGNQKPLRADNQMELRRFFVGPNDCEVTGVAFSPDYQSLFANIQHPGNWPYSDDATQI CCCCCCCCCCCCCHHHHHHEECCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCEE TPAGISIRPRAATVVISKVDGTEVGV ECCCEEECCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA