| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774821
Identifier: 119774821
GI number: 119774821
Start: 2059635
End: 2059970
Strand: Direct
Name: 119774821
Synonym: Sama_1685
Alternate gene names: NA
Gene position: 2059635-2059970 (Clockwise)
Preceding gene: 119774819
Following gene: 119774824
Centisome position: 47.83
GC content: 49.11
Gene sequence:
>336_bases ATGAGTAAACTGCGTATTTTCCAGTTACTGCTGGCGGGTTTGTCCATTTTGGGATGGGCGCTGGCGATATGGGCTTTGAT GCTGTTTCACGAAGCAAGACCTGATCGTGCTGTAGGTTATTTCCTGTCAAAAGGTGCAACCGTAAGGTTATTCTGGGAGC CGTCGCTCACCCTGCGTCTGGAGCAGGTCATCTGGATAGTGTGCGGTGTGAGTCTGGTGAGCCTGCTGTTTAATGTCTAT GTTGCGCAGCACAGCCGCATGGGTTACTGGTTTAATATTCCTTTGTTGTTACTCTCTTCATTGGCCGCAGGCCTTTATAT GAGTTTTTGGGTGTAG
Upstream 100 bases:
>100_bases TTATATTACCTTTCCGGTGGCTTTTCTCAAGCTGAAAAAGGTATGCTGCGGAATATATTCACAATCTTGTGGAGCCGGGT TGCACAAATGGAGGTGAGCC
Downstream 100 bases:
>100_bases TGCATTTTCGGCGCATACATCCGAGTGCTCACGCTCCACTGACTCAGTCCAATCGCGTTTTATTCCCGCAGGATGTTAAA TGGCGCCACCGTCTTTCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 111; Mature: 110
Protein sequence:
>111_residues MSKLRIFQLLLAGLSILGWALAIWALMLFHEARPDRAVGYFLSKGATVRLFWEPSLTLRLEQVIWIVCGVSLVSLLFNVY VAQHSRMGYWFNIPLLLLSSLAAGLYMSFWV
Sequences:
>Translated_111_residues MSKLRIFQLLLAGLSILGWALAIWALMLFHEARPDRAVGYFLSKGATVRLFWEPSLTLRLEQVIWIVCGVSLVSLLFNVY VAQHSRMGYWFNIPLLLLSSLAAGLYMSFWV >Mature_110_residues SKLRIFQLLLAGLSILGWALAIWALMLFHEARPDRAVGYFLSKGATVRLFWEPSLTLRLEQVIWIVCGVSLVSLLFNVYV AQHSRMGYWFNIPLLLLSSLAAGLYMSFWV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12677; Mature: 12546
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLRIFQLLLAGLSILGWALAIWALMLFHEARPDRAVGYFLSKGATVRLFWEPSLTLRL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCHHHHH EQVIWIVCGVSLVSLLFNVYVAQHSRMGYWFNIPLLLLSSLAAGLYMSFWV HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKLRIFQLLLAGLSILGWALAIWALMLFHEARPDRAVGYFLSKGATVRLFWEPSLTLRL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCHHHHH EQVIWIVCGVSLVSLLFNVYVAQHSRMGYWFNIPLLLLSSLAAGLYMSFWV HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA