| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774790
Identifier: 119774790
GI number: 119774790
Start: 2019007
End: 2019693
Strand: Direct
Name: 119774790
Synonym: Sama_1654
Alternate gene names: NA
Gene position: 2019007-2019693 (Clockwise)
Preceding gene: 119774773
Following gene: 119774791
Centisome position: 46.89
GC content: 49.93
Gene sequence:
>687_bases ATGAGTGTTACTCAGATAGTTACCTCAGAAGACATATTGCTGAAACTCTGTCATTCGGTGTCCCATGTGTTGTCCCACAC CAGTGGCAGCAGGGTCACACACGCGGCCATGGTGCAGAATATTTCCAGCACCCGTTTAAAGCCTGATCTGGGCTGCTTCT CCATTTTCGATGGTGGGTTTTCGGGATTGGTGGTGATCAATTTCTCGGCCGCTTCTGCCGTGGAAATCTATCGCCGTTAT ATGCTCAACATGGGCATGCCTGAAAGCGATTTGGCGTTCTCCCACAACTCCGATGAAGTCGGTAACGTGATGGGGGAACT TATGAACCAGATCCTGGGAGACTTTATCGGTAAGGTGTCCAAGGAGCTGCAAACCTCCATCAGTCAAAGTCAGCCGAAGA TGCTGACCATCAACAAGGAAATCACCATCTCCATTGATGCCAATCTGGATGAACCAGTGATCCGCCGGGTGTCTTTTATG ACCGAAAGCAACCACATCTTTTATCTTGAATTTGCCATGGACAAGACAGAGTTTGTCAAAACCCGGGAGTTTGAGCTGGA CGAGGAGTTCGATCCGGATTTCCTGATTGAGCAGCACGGCAATACCAGGTCACCCTGGTCACAGATGGCTGGCAAGGGCA TAGTGGCCGATGATGCTGATGATTTGCTCGATGAGCTGGGGATCTAA
Upstream 100 bases:
>100_bases CGATAAAATAGACGCTTATCAGGTTAATCGTTTGTTTTGACTTTGATTTCAAGTGATTTTATGCGCAAGATTAACTAATT CAATCAAAAGGCGGATAAAG
Downstream 100 bases:
>100_bases AGTCGCTTGCTATACAAGGAATTGCACTTGATTTACCATGAGCTTGCCGCTCTGTGTCGGGGCGGTGGCCAGTGGCCCGA GCAAATATAACAAGAGTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 228; Mature: 227
Protein sequence:
>228_residues MSVTQIVTSEDILLKLCHSVSHVLSHTSGSRVTHAAMVQNISSTRLKPDLGCFSIFDGGFSGLVVINFSAASAVEIYRRY MLNMGMPESDLAFSHNSDEVGNVMGELMNQILGDFIGKVSKELQTSISQSQPKMLTINKEITISIDANLDEPVIRRVSFM TESNHIFYLEFAMDKTEFVKTREFELDEEFDPDFLIEQHGNTRSPWSQMAGKGIVADDADDLLDELGI
Sequences:
>Translated_228_residues MSVTQIVTSEDILLKLCHSVSHVLSHTSGSRVTHAAMVQNISSTRLKPDLGCFSIFDGGFSGLVVINFSAASAVEIYRRY MLNMGMPESDLAFSHNSDEVGNVMGELMNQILGDFIGKVSKELQTSISQSQPKMLTINKEITISIDANLDEPVIRRVSFM TESNHIFYLEFAMDKTEFVKTREFELDEEFDPDFLIEQHGNTRSPWSQMAGKGIVADDADDLLDELGI >Mature_227_residues SVTQIVTSEDILLKLCHSVSHVLSHTSGSRVTHAAMVQNISSTRLKPDLGCFSIFDGGFSGLVVINFSAASAVEIYRRYM LNMGMPESDLAFSHNSDEVGNVMGELMNQILGDFIGKVSKELQTSISQSQPKMLTINKEITISIDANLDEPVIRRVSFMT ESNHIFYLEFAMDKTEFVKTREFELDEEFDPDFLIEQHGNTRSPWSQMAGKGIVADDADDLLDELGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25377; Mature: 25246
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTQIVTSEDILLKLCHSVSHVLSHTSGSRVTHAAMVQNISSTRLKPDLGCFSIFDGGF CCCHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC SGLVVINFSAASAVEIYRRYMLNMGMPESDLAFSHNSDEVGNVMGELMNQILGDFIGKVS CEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KELQTSISQSQPKMLTINKEITISIDANLDEPVIRRVSFMTESNHIFYLEFAMDKTEFVK HHHHHHHHHCCCCEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHH TREFELDEEFDPDFLIEQHGNTRSPWSQMAGKGIVADDADDLLDELGI HHCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure SVTQIVTSEDILLKLCHSVSHVLSHTSGSRVTHAAMVQNISSTRLKPDLGCFSIFDGGF CCHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCC SGLVVINFSAASAVEIYRRYMLNMGMPESDLAFSHNSDEVGNVMGELMNQILGDFIGKVS CEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH KELQTSISQSQPKMLTINKEITISIDANLDEPVIRRVSFMTESNHIFYLEFAMDKTEFVK HHHHHHHHHCCCCEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHH TREFELDEEFDPDFLIEQHGNTRSPWSQMAGKGIVADDADDLLDELGI HHCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA