| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774738
Identifier: 119774738
GI number: 119774738
Start: 1956832
End: 1957059
Strand: Direct
Name: 119774738
Synonym: Sama_1601
Alternate gene names: NA
Gene position: 1956832-1957059 (Clockwise)
Preceding gene: 119774737
Following gene: 119774739
Centisome position: 45.44
GC content: 53.07
Gene sequence:
>228_bases ATGGCTGAGTTTGTGTTGTACCACACCGATGGTTGTCATCTTTGCCATTTGGCCGAGGCGCTGCTGCAAGAGGCCGGCGT GACCTACCTGATGGTGGATATTTGTGATGATGAGTTGCTTGCAGAGCGTTATGGGGTGCGCATCCCGGTGCTTTTACGTA AGCAGGATGGCGCCGAGCTAGGCTGGCCGTTTGAACTTGTCGATGTAACCTCTTTTACAGGAGTCTGA
Upstream 100 bases:
>100_bases CTCGCGGCGGCTGGCCTCAAGGCGGTAAACATTGACGATAAGGTGTTGCCAATGGACTACGCCCGTAATCCGCAAATCCA TAACTGCTGGGTTGTGACCC
Downstream 100 bases:
>100_bases TGTGAGTCTTGTTCGTATCACCAATGGCTCTTTGGCCTATGGCTATGTTCCTTTATTGAAAAACGCCGATCTCAGCATCG AAGCCGGCGAGCGAGTGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 75; Mature: 74
Protein sequence:
>75_residues MAEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAELGWPFELVDVTSFTGV
Sequences:
>Translated_75_residues MAEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAELGWPFELVDVTSFTGV >Mature_74_residues AEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAELGWPFELVDVTSFTGV
Specific function: Unknown
COG id: COG0526
COG function: function code OC; Thiol-disulfide isomerase and thioredoxins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8398; Mature: 8267
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAEL CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCC GWPFELVDVTSFTGV CCCEEEEEECCCCCC >Mature Secondary Structure AEFVLYHTDGCHLCHLAEALLQEAGVTYLMVDICDDELLAERYGVRIPVLLRKQDGAEL CCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCC GWPFELVDVTSFTGV CCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA