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The map label for this gene is ynaI [C]

Identifier: 119774715

GI number: 119774715

Start: 1920653

End: 1922257

Strand: Direct

Name: ynaI [C]

Synonym: Sama_1578

Alternate gene names: 119774715

Gene position: 1920653-1922257 (Clockwise)

Preceding gene: 119774713

Following gene: 119774719

Centisome position: 44.6

GC content: 51.65

Gene sequence:

>1605_bases
ATGAAACGGATTTATCAGGTTTTTATCCTGTTTTGTTTTGCATTGTTCAGCAGTTTGAGCATGGCCAATTCGTCCCTGAC
CTTGATGCAGGCGCTGGATAAGTCCAGTGAGATAGAGGAGGTGCAAGCCCCGACGCCCGAGCAATACTCATACCGCGATC
CTCTGTGGCGGGATACCCCCAGAGGTGCGTTACAGGGATTCTTGAAAGCGGCCTGGGATCAGGATTACGCCCGGGCTTCG
GAGTACTTGGACTTGCGATTTTTGCCGGGCCGGATGAGCCCTGCTCAAGGGGAAAAGTATGCACGGGATCTGCAAGCCAT
TCTGGACCGTAACATCTGGATTGACCTGGGCACAGTGAATGACACGCCACAGGGCAATGAGCAGGATAATCTGCCAGCCT
ATCGCGATGCATTTGCCCGTATTCAGGTGGGTAACAAGGATGCGGTGTTTTTTCTGCAGCGCGTGCCTGATGCTGATATC
GGCAGTATCTGGAAAATCTCCAATGCCACCATAGCCCAGGTGCCGACACTTTACGAAAAGCTGGGGTATGGACCTTGGGT
AGAATGGTTTATTGCCCACGTGCCAGAGGGACGACTATTCAGGCTTAACCTTTGGGAATGGGCTTTTATGCTCACATTCC
TGACGGCATCATTGTTGTTGGTGATCCCGGTTACCTGGATTGTGAAATGGCTGCTGCTGAGGACCCAATGGCAACACAAG
GAGGAAACAGCCGCGATAGTCACAGGGCCACTGTGCTTTTTTATGGCTGTGATGCTCAATAAGGCGGCGATTCTACAAAC
GACCTTGCCGGTGATGACCAAAGAGCTTATCGATACCGGGGTGTTTTTAGTGCTGACATTGGTGTGGCTGCTCTGGTCGC
TGATGGGACTCATGCAAAGTGTGCTCAAGGCACGCTGGACGGAAAAGGGCAGTAAGCAGGCCGCCTCACTGCTGCGGCCA
TTGACCAATTTCTTGCGCATTTTTATGTTGGCAATGGTGTCGCTGATTTGGTTGCAACATCTGGGTTTCAATGTGGGGGC
GATTCTGGCGGGGATGGGTATTGGTGGCATCGCGTTGGCGCTGGCCTCCAAACAGTCCATCGAAAACTTTATTGGCACTG
TGACCCTGTATTCATCTGCTCCGCTCAAAGTAGGTAACCTGTGTAAGCTGGGCAGTTTGCGGGGCACAGTGGAAGAGATT
GGTCTGCGCTGTACCCGTATTCGCACCCTCGACCGGTCTGTGATCCATATTCCCAATGCCAAGCTGGCGGAAATGGAAAT
TGAAAACATCTCAGAGCGGGAAAAAATCCGCTTTAAAACCGATATCCGCCTGGATTACAACACCAGCGCCGAGCAAATCA
AAAAAATCACAGAAGATATCAAAGTCTTGCTTGAAACTACTGATAAGGTTAACGAAAAGCCTCTGAGGGTCACCTTCAGC
GGTTTTGGCTTGCACGGACTTGAAATCAATGTATTTGCCTATGTGGGTACTACGAGTTTGCCGACGTACCAACAGGTGGC
ACACGAGCTGAATCTCGGCATTATGGAAATCGTGGCCAAACACGGCTCCAAGGTGGTGCCGGCCATCGCGCCGGTAGCGC
CTTAA

Upstream 100 bases:

>100_bases
AACAATCAATTCTGCCCCTCTAAAACCTTGGATGACAACACTGTGAAAATATTGTGCCGGTGATAATATCCAGAGGTTAC
CCGAGTGATGGAATCGTACT

Downstream 100 bases:

>100_bases
GCTGACGTTTTCATAAGACGCCCGAATGCACTCATCGCCGTGGTGTGCTGGCTTGTGGCCAGGTAATAAGCGGTGCCAGC
AAAAAGGTTTCAGCAATTAA

Product: small-conductance mechanosensitive channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MKRIYQVFILFCFALFSSLSMANSSLTLMQALDKSSEIEEVQAPTPEQYSYRDPLWRDTPRGALQGFLKAAWDQDYARAS
EYLDLRFLPGRMSPAQGEKYARDLQAILDRNIWIDLGTVNDTPQGNEQDNLPAYRDAFARIQVGNKDAVFFLQRVPDADI
GSIWKISNATIAQVPTLYEKLGYGPWVEWFIAHVPEGRLFRLNLWEWAFMLTFLTASLLLVIPVTWIVKWLLLRTQWQHK
EETAAIVTGPLCFFMAVMLNKAAILQTTLPVMTKELIDTGVFLVLTLVWLLWSLMGLMQSVLKARWTEKGSKQAASLLRP
LTNFLRIFMLAMVSLIWLQHLGFNVGAILAGMGIGGIALALASKQSIENFIGTVTLYSSAPLKVGNLCKLGSLRGTVEEI
GLRCTRIRTLDRSVIHIPNAKLAEMEIENISEREKIRFKTDIRLDYNTSAEQIKKITEDIKVLLETTDKVNEKPLRVTFS
GFGLHGLEINVFAYVGTTSLPTYQQVAHELNLGIMEIVAKHGSKVVPAIAPVAP

Sequences:

>Translated_534_residues
MKRIYQVFILFCFALFSSLSMANSSLTLMQALDKSSEIEEVQAPTPEQYSYRDPLWRDTPRGALQGFLKAAWDQDYARAS
EYLDLRFLPGRMSPAQGEKYARDLQAILDRNIWIDLGTVNDTPQGNEQDNLPAYRDAFARIQVGNKDAVFFLQRVPDADI
GSIWKISNATIAQVPTLYEKLGYGPWVEWFIAHVPEGRLFRLNLWEWAFMLTFLTASLLLVIPVTWIVKWLLLRTQWQHK
EETAAIVTGPLCFFMAVMLNKAAILQTTLPVMTKELIDTGVFLVLTLVWLLWSLMGLMQSVLKARWTEKGSKQAASLLRP
LTNFLRIFMLAMVSLIWLQHLGFNVGAILAGMGIGGIALALASKQSIENFIGTVTLYSSAPLKVGNLCKLGSLRGTVEEI
GLRCTRIRTLDRSVIHIPNAKLAEMEIENISEREKIRFKTDIRLDYNTSAEQIKKITEDIKVLLETTDKVNEKPLRVTFS
GFGLHGLEINVFAYVGTTSLPTYQQVAHELNLGIMEIVAKHGSKVVPAIAPVAP
>Mature_534_residues
MKRIYQVFILFCFALFSSLSMANSSLTLMQALDKSSEIEEVQAPTPEQYSYRDPLWRDTPRGALQGFLKAAWDQDYARAS
EYLDLRFLPGRMSPAQGEKYARDLQAILDRNIWIDLGTVNDTPQGNEQDNLPAYRDAFARIQVGNKDAVFFLQRVPDADI
GSIWKISNATIAQVPTLYEKLGYGPWVEWFIAHVPEGRLFRLNLWEWAFMLTFLTASLLLVIPVTWIVKWLLLRTQWQHK
EETAAIVTGPLCFFMAVMLNKAAILQTTLPVMTKELIDTGVFLVLTLVWLLWSLMGLMQSVLKARWTEKGSKQAASLLRP
LTNFLRIFMLAMVSLIWLQHLGFNVGAILAGMGIGGIALALASKQSIENFIGTVTLYSSAPLKVGNLCKLGSLRGTVEEI
GLRCTRIRTLDRSVIHIPNAKLAEMEIENISEREKIRFKTDIRLDYNTSAEQIKKITEDIKVLLETTDKVNEKPLRVTFS
GFGLHGLEINVFAYVGTTSLPTYQQVAHELNLGIMEIVAKHGSKVVPAIAPVAP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=259, Percent_Identity=25.8687258687259, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789291, Length=173, Percent_Identity=26.5895953757225, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 60098; Mature: 60098

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIYQVFILFCFALFSSLSMANSSLTLMQALDKSSEIEEVQAPTPEQYSYRDPLWRDTP
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
RGALQGFLKAAWDQDYARASEYLDLRFLPGRMSPAQGEKYARDLQAILDRNIWIDLGTVN
HHHHHHHHHHHHCHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCC
DTPQGNEQDNLPAYRDAFARIQVGNKDAVFFLQRVPDADIGSIWKISNATIAQVPTLYEK
CCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHH
LGYGPWVEWFIAHVPEGRLFRLNLWEWAFMLTFLTASLLLVIPVTWIVKWLLLRTQWQHK
CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EETAAIVTGPLCFFMAVMLNKAAILQTTLPVMTKELIDTGVFLVLTLVWLLWSLMGLMQS
HHHHHHEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKARWTEKGSKQAASLLRPLTNFLRIFMLAMVSLIWLQHLGFNVGAILAGMGIGGIALA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH
LASKQSIENFIGTVTLYSSAPLKVGNLCKLGSLRGTVEEIGLRCTRIRTLDRSVIHIPNA
HHHHHHHHHHHHEEEEECCCCCCCCCCHHCCCCCCCHHHHCCHHHHHHHHCCCEEECCCC
KLAEMEIENISEREKIRFKTDIRLDYNTSAEQIKKITEDIKVLLETTDKVNEKPLRVTFS
HHHHHHHHCCCHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
GFGLHGLEINVFAYVGTTSLPTYQQVAHELNLGIMEIVAKHGSKVVPAIAPVAP
CCCEECEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCC
>Mature Secondary Structure
MKRIYQVFILFCFALFSSLSMANSSLTLMQALDKSSEIEEVQAPTPEQYSYRDPLWRDTP
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
RGALQGFLKAAWDQDYARASEYLDLRFLPGRMSPAQGEKYARDLQAILDRNIWIDLGTVN
HHHHHHHHHHHHCHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCC
DTPQGNEQDNLPAYRDAFARIQVGNKDAVFFLQRVPDADIGSIWKISNATIAQVPTLYEK
CCCCCCCCCCCCHHHHHHHHEEECCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHH
LGYGPWVEWFIAHVPEGRLFRLNLWEWAFMLTFLTASLLLVIPVTWIVKWLLLRTQWQHK
CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EETAAIVTGPLCFFMAVMLNKAAILQTTLPVMTKELIDTGVFLVLTLVWLLWSLMGLMQS
HHHHHHEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKARWTEKGSKQAASLLRPLTNFLRIFMLAMVSLIWLQHLGFNVGAILAGMGIGGIALA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHH
LASKQSIENFIGTVTLYSSAPLKVGNLCKLGSLRGTVEEIGLRCTRIRTLDRSVIHIPNA
HHHHHHHHHHHHEEEEECCCCCCCCCCHHCCCCCCCHHHHCCHHHHHHHHCCCEEECCCC
KLAEMEIENISEREKIRFKTDIRLDYNTSAEQIKKITEDIKVLLETTDKVNEKPLRVTFS
HHHHHHHHCCCHHHHEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
GFGLHGLEINVFAYVGTTSLPTYQQVAHELNLGIMEIVAKHGSKVVPAIAPVAP
CCCEECEEEEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]