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The map label for this gene is yfcH [H]

Identifier: 119774625

GI number: 119774625

Start: 1802387

End: 1803274

Strand: Reverse

Name: yfcH [H]

Synonym: Sama_1488

Alternate gene names: 119774625

Gene position: 1803274-1802387 (Counterclockwise)

Preceding gene: 119774626

Following gene: 119774622

Centisome position: 41.88

GC content: 57.32

Gene sequence:

>888_bases
ATGAACATATTACTGACAGGCGGCACAGGTTTTATAGGTCGGGCACTGGTCAGTGCCCTGTCTGAACATCAACTCACCAT
CCTCACCCGGGACACAGGCGCCGCAGCTGAGTTATTGGGCGAGCAGCACCATTACCTGCGCTCCCTCGATAAACTGGAAA
ACCTCGATGGTTTCGATGCCGTCATCAACCTCGCAGGCGAACCCATAGTCGGTAAACGCTGGAGCGACGCCCAGAAAAAA
CAGCTCTGCCACAGTCGCTGGGATCTGACTGCCTTGCTCACCGGTCTTATCCAGCAAAGCAGCGAACCGCCTGCGGTGTT
TATCAGCGGTTCGGCTATCGGCTATTACGGTGCCCAGGGCAGCCAACCGCTCACCGAATCTTCAAGTCCCCACAGTGAAT
TTACCCACATGCTCTGTGAAAAATGGGAGCAACTGGCGCTGGACGCAACAAGCGACGTGACCCGGGTGTGTATTCTGCGC
ACCGGTATTGTGCTTGGAAAACACGGCGGCGCCCTGGCCAAGATGTTGCCCCCCTTCAAACTCGGTTTGGGTGGCCCCAT
TGGCAGTGGTCAACAGGGCATGAGCTGGATCCATTTGGCCGATATGATTGGCCTGATACGTTTCCTGCTAATCAACCCCA
AATGCAGTGGCATCTTTAACGCGACGGCTCCGAATCCCGTCAGCAACCGGGTCTTCTCCCAAACACTGGGCGAAGTGCTT
CACCGCCCAGCCCTGCTCCCGGCACCCGCCTTTGCCCTCCATGCCCTGCTGGGGGAAGCCGCCATCATGGTGCTTACCGG
TCAGTACGTGCACCCGCAGAGGGCAATGGAGGCTGGGTTCGGCTTTCGCTTTCCCTATTTGCGTCAGGCGCTGGAAGATC
TGCTTTAA

Upstream 100 bases:

>100_bases
GATTCAGTGTCCATGGAGCTCAGCTACCACAAAAACGCCTGATCTCATTATGCCTATGCAGAGTATATGCTTGTAAGAAG
CGGTTTTTTCGGAGCAGCGT

Downstream 100 bases:

>100_bases
CACTCAAGTCTCGGTGCGAAGCAGCGACAGGCAGCTTTGGGACAACAGCTCCCGGCAGCGCCAGTAACCGAGCACGGCAA
CCAGTGCGGCCCCCAGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNILLTGGTGFIGRALVSALSEHQLTILTRDTGAAAELLGEQHHYLRSLDKLENLDGFDAVINLAGEPIVGKRWSDAQKK
QLCHSRWDLTALLTGLIQQSSEPPAVFISGSAIGYYGAQGSQPLTESSSPHSEFTHMLCEKWEQLALDATSDVTRVCILR
TGIVLGKHGGALAKMLPPFKLGLGGPIGSGQQGMSWIHLADMIGLIRFLLINPKCSGIFNATAPNPVSNRVFSQTLGEVL
HRPALLPAPAFALHALLGEAAIMVLTGQYVHPQRAMEAGFGFRFPYLRQALEDLL

Sequences:

>Translated_295_residues
MNILLTGGTGFIGRALVSALSEHQLTILTRDTGAAAELLGEQHHYLRSLDKLENLDGFDAVINLAGEPIVGKRWSDAQKK
QLCHSRWDLTALLTGLIQQSSEPPAVFISGSAIGYYGAQGSQPLTESSSPHSEFTHMLCEKWEQLALDATSDVTRVCILR
TGIVLGKHGGALAKMLPPFKLGLGGPIGSGQQGMSWIHLADMIGLIRFLLINPKCSGIFNATAPNPVSNRVFSQTLGEVL
HRPALLPAPAFALHALLGEAAIMVLTGQYVHPQRAMEAGFGFRFPYLRQALEDLL
>Mature_295_residues
MNILLTGGTGFIGRALVSALSEHQLTILTRDTGAAAELLGEQHHYLRSLDKLENLDGFDAVINLAGEPIVGKRWSDAQKK
QLCHSRWDLTALLTGLIQQSSEPPAVFISGSAIGYYGAQGSQPLTESSSPHSEFTHMLCEKWEQLALDATSDVTRVCILR
TGIVLGKHGGALAKMLPPFKLGLGGPIGSGQQGMSWIHLADMIGLIRFLLINPKCSGIFNATAPNPVSNRVFSQTLGEVL
HRPALLPAPAFALHALLGEAAIMVLTGQYVHPQRAMEAGFGFRFPYLRQALEDLL

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=304, Percent_Identity=37.5, Blast_Score=187, Evalue=8e-48,
Organism=Escherichia coli, GI1788642, Length=297, Percent_Identity=53.1986531986532, Blast_Score=317, Evalue=7e-88,
Organism=Drosophila melanogaster, GI28573846, Length=297, Percent_Identity=32.996632996633, Blast_Score=166, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 31782; Mature: 31782

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLTGGTGFIGRALVSALSEHQLTILTRDTGAAAELLGEQHHYLRSLDKLENLDGFDA
CEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VINLAGEPIVGKRWSDAQKKQLCHSRWDLTALLTGLIQQSSEPPAVFISGSAIGYYGAQG
HHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCEEEECCCCC
SQPLTESSSPHSEFTHMLCEKWEQLALDATSDVTRVCILRTGIVLGKHGGALAKMLPPFK
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHHHHHCCCHH
LGLGGPIGSGQQGMSWIHLADMIGLIRFLLINPKCSGIFNATAPNPVSNRVFSQTLGEVL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHH
HRPALLPAPAFALHALLGEAAIMVLTGQYVHPQRAMEAGFGFRFPYLRQALEDLL
HCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MNILLTGGTGFIGRALVSALSEHQLTILTRDTGAAAELLGEQHHYLRSLDKLENLDGFDA
CEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH
VINLAGEPIVGKRWSDAQKKQLCHSRWDLTALLTGLIQQSSEPPAVFISGSAIGYYGAQG
HHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCEEEECCCCC
SQPLTESSSPHSEFTHMLCEKWEQLALDATSDVTRVCILRTGIVLGKHGGALAKMLPPFK
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHHHHHCCCHH
LGLGGPIGSGQQGMSWIHLADMIGLIRFLLINPKCSGIFNATAPNPVSNRVFSQTLGEVL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHH
HRPALLPAPAFALHALLGEAAIMVLTGQYVHPQRAMEAGFGFRFPYLRQALEDLL
HCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]