Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is ynbE [C]

Identifier: 119774617

GI number: 119774617

Start: 1790812

End: 1791000

Strand: Reverse

Name: ynbE [C]

Synonym: Sama_1480

Alternate gene names: 119774617

Gene position: 1791000-1790812 (Counterclockwise)

Preceding gene: 119774618

Following gene: 119774616

Centisome position: 41.59

GC content: 53.44

Gene sequence:

>189_bases
GTGAAATTAGTCGCACCCGGCCTTGGCGCCATGATGGCGCTACTGATAACAGCCTGCTCGCCGACGGTCAAAATTGAGCC
GCCCGACAAGCCGATTGTTATTAATCTGAACGTGAAAATTGAACACGAAATCCGCATCAAGGTGGACAAGGAGCTTGATG
CCCTGCTCGCCGACGACCAGCTGTTCTGA

Upstream 100 bases:

>100_bases
ACTCTCATGAAGAGAACTTACTGCAGCTTTTTCGCAGCCTGACCATAAGCGAAAAGCTACAAAGTCATATTGAACAGAGT
GTTAACTGAGGGACTCGCCC

Downstream 100 bases:

>100_bases
CCGGAGAATGCGATGAAAAGATGGATAATGATGACAGCCGCCGCCCTGCTTTCTTTCAATGTGTTTGCCATGGATCTGCA
GCAGGCCAAATCGGACGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 62; Mature: 62

Protein sequence:

>62_residues
MKLVAPGLGAMMALLITACSPTVKIEPPDKPIVINLNVKIEHEIRIKVDKELDALLADDQLF

Sequences:

>Translated_62_residues
MKLVAPGLGAMMALLITACSPTVKIEPPDKPIVINLNVKIEHEIRIKVDKELDALLADDQLF
>Mature_62_residues
MKLVAPGLGAMMALLITACSPTVKIEPPDKPIVINLNVKIEHEIRIKVDKELDALLADDQLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6794; Mature: 6794

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVAPGLGAMMALLITACSPTVKIEPPDKPIVINLNVKIEHEIRIKVDKELDALLADDQ
CEEECCCHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCEEECCCC
LF
CC
>Mature Secondary Structure
MKLVAPGLGAMMALLITACSPTVKIEPPDKPIVINLNVKIEHEIRIKVDKELDALLADDQ
CEEECCCHHHHHHHHHHCCCCEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCEEECCCC
LF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA