| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774487
Identifier: 119774487
GI number: 119774487
Start: 1639873
End: 1640202
Strand: Reverse
Name: 119774487
Synonym: Sama_1350
Alternate gene names: NA
Gene position: 1640202-1639873 (Counterclockwise)
Preceding gene: 119774488
Following gene: 119774486
Centisome position: 38.09
GC content: 37.58
Gene sequence:
>330_bases ATGCCAAGAAAGAAGCAACTCAAAGTAAATGGAAGTGCAATCACGGGATTCAGTGTGCAAGTTAAAACAGTTAAAAGCAC ATATGATGGATCTCCGATTGATATTGTGGATCTACAAATTTCTACGGGTAACGATGTCTATAGCTACGATATACGTCAAG ACGAGAGAGCGCCTGATGTGAATGCAACTAGACACTACATTGAGGACTCTTTAAATAAAGCTAAAGAAGATTTCTTGAAC GTTGAAATTTCCGAGTACACAGAAAAAAGTTACCTATTTTTTAATGTTCAGAAAATAGGGCAAGTCCAATACACCGGTTA CAGGCTTTAG
Upstream 100 bases:
>100_bases AAATTGATGAATAGCCTTCTGACTGAGAAAGCTAACAAGTCAATGCAGCCGACCGCTAACGCGTCGGCTGATTGAAGCGT TAGCTAAAAAAGGAGGCTAT
Downstream 100 bases:
>100_bases CTTGTTTCGTAGGGAGTGGCGGCATGCAAAAAGAACAATGCTATATGTGTGAAAAATCAGCCACATCTGCTGAGCATGTT CCACCAAAGTGCTTATTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLN VEISEYTEKSYLFFNVQKIGQVQYTGYRL
Sequences:
>Translated_109_residues MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLN VEISEYTEKSYLFFNVQKIGQVQYTGYRL >Mature_108_residues PRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLNV EISEYTEKSYLFFNVQKIGQVQYTGYRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12492; Mature: 12361
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDV CCCCCEEEECCCEEECEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC NATRHYIEDSLNKAKEDFLNVEISEYTEKSYLFFNVQKIGQVQYTGYRL CHHHHHHHHHHHHHHHHHCCEEEHHCCCCEEEEEEEECCCEEEEEEECC >Mature Secondary Structure PRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDV CCCCEEEECCCEEECEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC NATRHYIEDSLNKAKEDFLNVEISEYTEKSYLFFNVQKIGQVQYTGYRL CHHHHHHHHHHHHHHHHHCCEEEHHCCCCEEEEEEEECCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA