Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774487

Identifier: 119774487

GI number: 119774487

Start: 1639873

End: 1640202

Strand: Reverse

Name: 119774487

Synonym: Sama_1350

Alternate gene names: NA

Gene position: 1640202-1639873 (Counterclockwise)

Preceding gene: 119774488

Following gene: 119774486

Centisome position: 38.09

GC content: 37.58

Gene sequence:

>330_bases
ATGCCAAGAAAGAAGCAACTCAAAGTAAATGGAAGTGCAATCACGGGATTCAGTGTGCAAGTTAAAACAGTTAAAAGCAC
ATATGATGGATCTCCGATTGATATTGTGGATCTACAAATTTCTACGGGTAACGATGTCTATAGCTACGATATACGTCAAG
ACGAGAGAGCGCCTGATGTGAATGCAACTAGACACTACATTGAGGACTCTTTAAATAAAGCTAAAGAAGATTTCTTGAAC
GTTGAAATTTCCGAGTACACAGAAAAAAGTTACCTATTTTTTAATGTTCAGAAAATAGGGCAAGTCCAATACACCGGTTA
CAGGCTTTAG

Upstream 100 bases:

>100_bases
AAATTGATGAATAGCCTTCTGACTGAGAAAGCTAACAAGTCAATGCAGCCGACCGCTAACGCGTCGGCTGATTGAAGCGT
TAGCTAAAAAAGGAGGCTAT

Downstream 100 bases:

>100_bases
CTTGTTTCGTAGGGAGTGGCGGCATGCAAAAAGAACAATGCTATATGTGTGAAAAATCAGCCACATCTGCTGAGCATGTT
CCACCAAAGTGCTTATTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLN
VEISEYTEKSYLFFNVQKIGQVQYTGYRL

Sequences:

>Translated_109_residues
MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLN
VEISEYTEKSYLFFNVQKIGQVQYTGYRL
>Mature_108_residues
PRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDVNATRHYIEDSLNKAKEDFLNV
EISEYTEKSYLFFNVQKIGQVQYTGYRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12492; Mature: 12361

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDV
CCCCCEEEECCCEEECEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC
NATRHYIEDSLNKAKEDFLNVEISEYTEKSYLFFNVQKIGQVQYTGYRL
CHHHHHHHHHHHHHHHHHCCEEEHHCCCCEEEEEEEECCCEEEEEEECC
>Mature Secondary Structure 
PRKKQLKVNGSAITGFSVQVKTVKSTYDGSPIDIVDLQISTGNDVYSYDIRQDERAPDV
CCCCEEEECCCEEECEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCCC
NATRHYIEDSLNKAKEDFLNVEISEYTEKSYLFFNVQKIGQVQYTGYRL
CHHHHHHHHHHHHHHHHHCCEEEHHCCCCEEEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA