Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774460

Identifier: 119774460

GI number: 119774460

Start: 1611884

End: 1612657

Strand: Reverse

Name: 119774460

Synonym: Sama_1323

Alternate gene names: NA

Gene position: 1612657-1611884 (Counterclockwise)

Preceding gene: 119774462

Following gene: 119774458

Centisome position: 37.45

GC content: 50.9

Gene sequence:

>774_bases
ATGTTATTAATGATCCTGCTCGCCTGTGGGGCCTTGTTGCTGCTCATTATTGGAGTCAACGTCGTTCAGCAGCAAAAGGA
ACGTGCAGAGGCCGAGCGGCGTACAGAAGTTGCACGACAACGGGCGATTATCGATGAGACCGAAGGCGTACTTTCCAACA
CAGGTATGTTTCCCTGCAGCACCCATGTCGTCATGGTGCTTTATCGACGCATCCAGGAAGCCCTGGCGGTGGCAGTCGAT
CTGAGCACGGGGCAACCCAAGTCCGATTACCAACGTCGATTAATTGATGTTCAAAGCCAAATCGAAGGCATGAAAGGCGC
CGTGAATGTACCACCTGTTGAAAGCTTTCGCTTACCGGATAACGACAAGCAAATTCTGGTGATTGTGCAAACCCTCAAAA
AACTTAAAGCCATACTGAGAGCCGAGCACAATAAAGGCAAAGTAGACCCCATGATTTTTGCCGATGAAGAGGCCCGGGTA
GACAGTCTGCAATTGCGTATCAACGTCGAGTCCATGATTTCGCGCGCAAGGGCGGCCTGTTACATGAAACAGTATGGCTC
TGCCAAGCAAATGGTGACCAAGGCGCTATCAACCCTGCACGCGATTAAGGCACAGACCCCGAACGATCCTTTTATTGGTC
GAAAAGTGGATGAAGCCAAACAGTTGCTTGATGAAATCATGGGCGCCCAGAAGCTGTCCCAGCCAAGCGCGCCCAGCTCC
CGCAAGGAAGGTGACGATTTGGATATGCTGTTCCAACCCAAAAAGAAATGGTAA

Upstream 100 bases:

>100_bases
CCAATTTGAGCGACATGTCCCCCAAGCTGCGCTAAGATATCTATGCTAGTTTATTGATTTATTGTAGCATTGGCTGAATT
GTAACAATAATGGACGACCT

Downstream 100 bases:

>100_bases
CGCCATCATTGATTACATCCCTCCCACATAAAAAAATCCCCGCATTGCGGGGATTTTTTTATATGGCCAACCTGAGAAGG
GTTGGCCGGTAAAACATCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLLMILLACGALLLLIIGVNVVQQQKERAEAERRTEVARQRAIIDETEGVLSNTGMFPCSTHVVMVLYRRIQEALAVAVD
LSTGQPKSDYQRRLIDVQSQIEGMKGAVNVPPVESFRLPDNDKQILVIVQTLKKLKAILRAEHNKGKVDPMIFADEEARV
DSLQLRINVESMISRARAACYMKQYGSAKQMVTKALSTLHAIKAQTPNDPFIGRKVDEAKQLLDEIMGAQKLSQPSAPSS
RKEGDDLDMLFQPKKKW

Sequences:

>Translated_257_residues
MLLMILLACGALLLLIIGVNVVQQQKERAEAERRTEVARQRAIIDETEGVLSNTGMFPCSTHVVMVLYRRIQEALAVAVD
LSTGQPKSDYQRRLIDVQSQIEGMKGAVNVPPVESFRLPDNDKQILVIVQTLKKLKAILRAEHNKGKVDPMIFADEEARV
DSLQLRINVESMISRARAACYMKQYGSAKQMVTKALSTLHAIKAQTPNDPFIGRKVDEAKQLLDEIMGAQKLSQPSAPSS
RKEGDDLDMLFQPKKKW
>Mature_257_residues
MLLMILLACGALLLLIIGVNVVQQQKERAEAERRTEVARQRAIIDETEGVLSNTGMFPCSTHVVMVLYRRIQEALAVAVD
LSTGQPKSDYQRRLIDVQSQIEGMKGAVNVPPVESFRLPDNDKQILVIVQTLKKLKAILRAEHNKGKVDPMIFADEEARV
DSLQLRINVESMISRARAACYMKQYGSAKQMVTKALSTLHAIKAQTPNDPFIGRKVDEAKQLLDEIMGAQKLSQPSAPSS
RKEGDDLDMLFQPKKKW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28737; Mature: 28737

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLMILLACGALLLLIIGVNVVQQQKERAEAERRTEVARQRAIIDETEGVLSNTGMFPCS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
THVVMVLYRRIQEALAVAVDLSTGQPKSDYQRRLIDVQSQIEGMKGAVNVPPVESFRLPD
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NDKQILVIVQTLKKLKAILRAEHNKGKVDPMIFADEEARVDSLQLRINVESMISRARAAC
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHH
YMKQYGSAKQMVTKALSTLHAIKAQTPNDPFIGRKVDEAKQLLDEIMGAQKLSQPSAPSS
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
RKEGDDLDMLFQPKKKW
CCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MLLMILLACGALLLLIIGVNVVQQQKERAEAERRTEVARQRAIIDETEGVLSNTGMFPCS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
THVVMVLYRRIQEALAVAVDLSTGQPKSDYQRRLIDVQSQIEGMKGAVNVPPVESFRLPD
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
NDKQILVIVQTLKKLKAILRAEHNKGKVDPMIFADEEARVDSLQLRINVESMISRARAAC
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHHHH
YMKQYGSAKQMVTKALSTLHAIKAQTPNDPFIGRKVDEAKQLLDEIMGAQKLSQPSAPSS
HHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
RKEGDDLDMLFQPKKKW
CCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA