Click here to switch to the map view.

The map label for this gene is exbD2 [H]

Identifier: 119774394

GI number: 119774394

Start: 1545373

End: 1545777

Strand: Direct

Name: exbD2 [H]

Synonym: Sama_1257

Alternate gene names: 119774394

Gene position: 1545373-1545777 (Clockwise)

Preceding gene: 119774393

Following gene: 119774395

Centisome position: 35.89

GC content: 49.63

Gene sequence:

>405_bases
ATGGCTCGTAAAAAGCATTCCAGCGTAGACGAGGAAGCTCAAATCGACATGACCCCGATGCTCGACATCGTGTTCATCAT
GCTGATCTTCTTCATCGTAACTACTTCGTTCGTGAAGCCATCTGGTTTGGACTACAACAAGCCTCCGGCAGCACAAGCGA
CTAAAAAGCCTTCAGCAAACATCTTTATCGGTGTGAGCAAGACTGGCGTCATCATGATGGAAAACCGTCAGGTTGACATC
GAGCGTGTGACTGCAAACGTTGAGCGTATGTTGGCAGAAGCACCAGAAGCCTCTGTTCTGATCCAGGCAGACAAAGAAGC
CCAACACGGCATCGTTGTTAAAGTTCTGGACCAGGTGAAGGCTGCCGGTATAGACAAGATCGCAGTATCTGCGGGGAACG
ACTAA

Upstream 100 bases:

>100_bases
CTGTCCGGGGTATTCTTCAGTACCCGTCTGGATGCCAAGATGAGAATTAGCCTTGAGCGACTGAAAGACAGTCTGCCTCA
CCACTAAAGAGAGATTTAAC

Downstream 100 bases:

>100_bases
TTATGTTGAGAGCACTAGTATCTATCATTATTGGTGCTTTGGTGACATTTGGTTTGTTCTGGTTCATGGCTGCCTTGGTG
GGGGGCGGTGCTCAACGCGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MARKKHSSVDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPPAAQATKKPSANIFIGVSKTGVIMMENRQVDI
ERVTANVERMLAEAPEASVLIQADKEAQHGIVVKVLDQVKAAGIDKIAVSAGND

Sequences:

>Translated_134_residues
MARKKHSSVDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPPAAQATKKPSANIFIGVSKTGVIMMENRQVDI
ERVTANVERMLAEAPEASVLIQADKEAQHGIVVKVLDQVKAAGIDKIAVSAGND
>Mature_133_residues
ARKKHSSVDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPPAAQATKKPSANIFIGVSKTGVIMMENRQVDIE
RVTANVERMLAEAPEASVLIQADKEAQHGIVVKVLDQVKAAGIDKIAVSAGND

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14555; Mature: 14424

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKHSSVDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPPAAQATKKPSAN
CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
IFIGVSKTGVIMMENRQVDIERVTANVERMLAEAPEASVLIQADKEAQHGIVVKVLDQVK
EEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
AAGIDKIAVSAGND
HCCCCEEEEECCCC
>Mature Secondary Structure 
ARKKHSSVDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPPAAQATKKPSAN
CCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
IFIGVSKTGVIMMENRQVDIERVTANVERMLAEAPEASVLIQADKEAQHGIVVKVLDQVK
EEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH
AAGIDKIAVSAGND
HCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]