| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is tolQ [C]
Identifier: 119774392
GI number: 119774392
Start: 1543477
End: 1544832
Strand: Direct
Name: tolQ [C]
Synonym: Sama_1255
Alternate gene names: 119774392
Gene position: 1543477-1544832 (Clockwise)
Preceding gene: 119774391
Following gene: 119774393
Centisome position: 35.84
GC content: 50.29
Gene sequence:
>1356_bases ATGAAGAAGTTAATTTCTACCGCCGTTGTTGCGGCCAGTCTGTCACTCACTGCCGGTATGGTTAGTGCTGCTGACGCGCC AAAGACTATTGATCAACTGCTTCAGCAAGTTAAAACTGAGCGTACCGCTGAAGGTAAAGTAAATGCCAAGCGCGAAGCTG AGTTCAAAGCTGAGCGTGGTGACAAAGCTTCTCTGCTGCAACGTGAAAAATCTGCTCTGGCTGCCGAAAAGCAGCGTGGC CAAGACCTGAACCAGGCCTTCATCGACAACGAGCGTAAAATCGCTCAGCTCGAAGAAGACCTGAAAACCGCTCAGGGTGA CCTGGGTGAAATGTTTGGTGTGGTTAAAGGTGAAGCCGGTGATTTCGCTGGTAAGCTGGTAGGCTCTAACGTATCTGCTC AGTACCCTAAGCGTGACGTGTTCATCGCTGATCTGGGTTCTCGCAAGCAGCTGCCAAAAATCGAAGAACTGGAAAAGTTC TGGCAAGAACAGCTGTTCGAAATGGCTGAGTCTGGCAAAGTGGTTAAGTTTGAAGCTGCTGTAACCGACATCGACGGTAA CGTAGTTAACACCACTGTTCACCGTATCGGTTCTTTCAACCTGACTGCCGATGGCAAGTATGTGGTATACAACCCAGAAC TGGGTCTGATCCAACAGCTGTCTGCTCAGCCAGAAGGTTACCAGGTTGCGCCAATCGCTAAGTGGGAAGCCACTACCAGC GGTGCCGCCAAACTGTACATCGACCCAGCTCGCGGTACTCTGCTGAACATCTTCACCCAGAAAGCATCTTTCCAAGATCG TATCGAAGCCGGTGGCGTGATTGGTTACATCATCATCGGTCTGCTGGCCTTGGGTCTGCTGATTGGTCTTGAGCGTCTGC TGACTCTGTTCGTGATTGGTTCTAAAGTTAAATCTCAGGCCAAGAACGTAGCTAACCCAGGCAACAACGCACTGGGCCGT ATCCTGAAAGTGTATCAGGACAACAAAGATGCCGACGTTGAAACTCTGGAACTGAAACTGGATGAAGCCATCCTGAAAGA AACTCCAGCTATCGAGACTCGTATCTCTATCATCAAAGTACTGGCCGCTATCGCTCCTATGATGGGTCTGCTGGGTACCG TAACCGGTATGATTGCAACCTTCCAGAGCATCCAGCTGTTCGGTACTGGCGATCCAAAACTGATGGCCGGCGGTATTTCT ATGGCACTGGTAACTACTGTTCAAGGTCTGGTTGCTGCTCTGCCTCTGATGCTGGTTCACGCTATCGTTGTGGCTCGCAG TAAGACCATCGTTCAAACTCTGGAAGAACAGAGTGCAGGTATCATTGCTGAACACGCTGAGAAGAGGGCTAACTAA
Upstream 100 bases:
>100_bases GCCACCTGCGTGAGCTGACCAAAGGCATCCGTATCGCCCGTAAACAAGGCGCTCTTGACCTCTTTGCGTTACCAATCCCA GCTGCGGAGACTGCAAAATA
Downstream 100 bases:
>100_bases TGATGCTATTCCTGATGGATGTATGGGATTCCGTCAGGGGCTTCATGGCCACCGGAGGCGACGTCCTCTGGCTTGTAGCG GTAGTGTTGTTTCTCATGTG
Product: MotA/TolQ/ExbB proton channel family protein
Products: NA
Alternate protein names: MotA/lQ/ExbB Proton Channel Family Protein; NB System Biopolymer Transport Component; Transporter MotA/lQ/ExbB Proton Channel Family Protein; Biopolymer Transport ExbB Protein; NB System Transport; LQ Protein; Biopolymer Transport Proteins-Like; Outer Membrane Transport Energization Protein ExbB; Transporter Proton Channel Domain Containing Protein; L Protein; ATPase; Biopolymer Transport Protein lR; Transporter MotA/lQ/ExbB Proton Channel Family; Adventurous Gliding Motility Protein R; Biopolymer Transport Protein ExbB; Biopolymer Transport Proteinexbb-Related Protein; Biopolymer Transport; Transport Protein lQ; MotA/lQ/ExbB Proton Channel Family Domain Protein; Mota/lq/Exbb Proton Channel Family Protein; LOW QUALITY PROTEIN Biopolymer Transport ExbB Protein; ExbB-Like Biopolymer Transport; Biopolymer Transport Protein ExbB-Like Protein; Biopolymer Transport Protein ExbB-Like; Mota/lq/Exbb Proton Channel; Biopolymer Transport Protein ExbB-Related Protein; L R/Q Protein; Ligand Gated Channel Protein lQ; MotA/lQ/ExbB Proton Channel Protein
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MKKLISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERGDKASLLQREKSALAAEKQRG QDLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAGDFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKF WQEQLFEMAESGKVVKFEAAVTDIDGNVVNTTVHRIGSFNLTADGKYVVYNPELGLIQQLSAQPEGYQVAPIAKWEATTS GAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTLFVIGSKVKSQAKNVANPGNNALGR ILKVYQDNKDADVETLELKLDEAILKETPAIETRISIIKVLAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGIS MALVTTVQGLVAALPLMLVHAIVVARSKTIVQTLEEQSAGIIAEHAEKRAN
Sequences:
>Translated_451_residues MKKLISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERGDKASLLQREKSALAAEKQRG QDLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAGDFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKF WQEQLFEMAESGKVVKFEAAVTDIDGNVVNTTVHRIGSFNLTADGKYVVYNPELGLIQQLSAQPEGYQVAPIAKWEATTS GAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTLFVIGSKVKSQAKNVANPGNNALGR ILKVYQDNKDADVETLELKLDEAILKETPAIETRISIIKVLAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGIS MALVTTVQGLVAALPLMLVHAIVVARSKTIVQTLEEQSAGIIAEHAEKRAN >Mature_451_residues MKKLISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERGDKASLLQREKSALAAEKQRG QDLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAGDFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKF WQEQLFEMAESGKVVKFEAAVTDIDGNVVNTTVHRIGSFNLTADGKYVVYNPELGLIQQLSAQPEGYQVAPIAKWEATTS GAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTLFVIGSKVKSQAKNVANPGNNALGR ILKVYQDNKDADVETLELKLDEAILKETPAIETRISIIKVLAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGIS MALVTTVQGLVAALPLMLVHAIVVARSKTIVQTLEEQSAGIIAEHAEKRAN
Specific function: Involved In The Tonb-Independent Uptake Of Group A Colicins (Colicins A, E1, E2, E3, And K). [C]
COG id: COG0811
COG function: function code U; Biopolymer transport proteins
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48442; Mature: 48442
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERG CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC DKASLLQREKSALAAEKQRGQDLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAG CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC DFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKFWQEQLFEMAESGKVVKFEAA CHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE VTDIDGNVVNTTVHRIGSFNLTADGKYVVYNPELGLIQQLSAQPEGYQVAPIAKWEATTS EEECCCCHHHHHHHHHCCEEEECCCEEEEECCCHHHHHHHCCCCCCEEECCEECCCCCCC GAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTLFVIG CCEEEEEECCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKVKSQAKNVANPGNNALGRILKVYQDNKDADVETLELKLDEAILKETPAIETRISIIKV HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH LAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALVTTVQGLVAALPLMLVH HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH AIVVARSKTIVQTLEEQSAGIIAEHAEKRAN HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC >Mature Secondary Structure MKKLISTAVVAASLSLTAGMVSAADAPKTIDQLLQQVKTERTAEGKVNAKREAEFKAERG CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC DKASLLQREKSALAAEKQRGQDLNQAFIDNERKIAQLEEDLKTAQGDLGEMFGVVKGEAG CHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC DFAGKLVGSNVSAQYPKRDVFIADLGSRKQLPKIEELEKFWQEQLFEMAESGKVVKFEAA CHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE VTDIDGNVVNTTVHRIGSFNLTADGKYVVYNPELGLIQQLSAQPEGYQVAPIAKWEATTS EEECCCCHHHHHHHHHCCEEEECCCEEEEECCCHHHHHHHCCCCCCEEECCEECCCCCCC GAAKLYIDPARGTLLNIFTQKASFQDRIEAGGVIGYIIIGLLALGLLIGLERLLTLFVIG CCEEEEEECCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKVKSQAKNVANPGNNALGRILKVYQDNKDADVETLELKLDEAILKETPAIETRISIIKV HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH LAAIAPMMGLLGTVTGMIATFQSIQLFGTGDPKLMAGGISMALVTTVQGLVAALPLMLVH HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH AIVVARSKTIVQTLEEQSAGIIAEHAEKRAN HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA