Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774349

Identifier: 119774349

GI number: 119774349

Start: 1491000

End: 1493096

Strand: Reverse

Name: 119774349

Synonym: Sama_1212

Alternate gene names: NA

Gene position: 1493096-1491000 (Counterclockwise)

Preceding gene: 119774350

Following gene: 119774348

Centisome position: 34.67

GC content: 55.22

Gene sequence:

>2097_bases
ATGAAACCCCATTTCTCCCCCACGCTGAGCCTGATAGCTTCCGCCATACTCCTGGGGATGTCCGGACAGGTCTTGGCGGG
TTACGGCTTGAAAGACGCCAACCGCAGCACAGTAAAAAAAGAAGCCTGGGTTTGCAAAGGATGTGAAATCAAGTCGGAAT
CCACCTCAGCCATCACCGCCGGCGTAGCCTGGCAGGACGGCGAAAACAGCCACTTTGCCAACACCACAGGCACAGACGCC
GATGGAGCCACCGGTTTTGTCAGCGCCGACATTCAACACCGCGGCGACAAGGATTACCGACTCGACTTCCAGGCCGACAA
GCTGGGATTTGATGCATCCAGCGCCAGGCTCGCCATCAAAAAGCCCGGCCACTACCAGTTTTATCTCGACTATCGTGCGC
TCGCCCGGTACGACACCAATCAAGGCGTAACGCCTTACAGCGCTGAGGGCGACCTGCTGGTATTGCCGGATAACTGGCAA
ACCGCCGGCACCACCGCAGGCATGACACGGCTGCAGGATGCACACACGGTGAAACTGGAGAAAAAACGTCAGCGCTTTGA
ACTTGGCGGTGCCGTTACCGGTGACAGTTTTACCAGTGAACTCAACTTTCGGCACGAAACCCGCGAAGGCGCCCAGCGAA
GCAGCGTTAACCTGCTGACCAATGCTGCCATGGTTGCCAAACCCATAGACGACAGCACAGACACCCTCGATGCCAAGGTA
TATTGGCGCGGTGACAGGTTTTTGGGTGGCATCAACGGCCAGATAAGCAAATACAGTAACGATCATCAGCGTCTTGCATT
CGACAACGCCTTCTACCCTACCTTTGGTGCAGCCTATAACGGGCAAATGGCGGTTGATCCAGATAATCAGGCGTTTAGCC
TGGGAACCGACCTGCAGTTTTTTGAAGGGGCGCAGCAGGCCATTATGCGAGCACGCTTCAGCCACCTGACCCAGGATGAG
CCGCTGCTGAATGCCACAGTAACCGGCCCATCTCCTGCATTGCCTGTCATGAGCCCGGATACTCAGGTGGACCTGATGGA
GCTGGGGCTTGCATACAGCAACAGGCTCAGCCGGGAATTCTCGGTGCGCGCCTCATATGATTTTCGCGACCGCGACAATA
AAACCCCCGAGTACCTCTACCCACTGGTCACAACCGACAGCATCTATCGTGGTGAGTACTACAACAAAGGCTACGACAGA
ACCCGCCAGCTGCTGAAACTGGGTGCAAAATACCGCTTCAGCCGCCAATGGGATCTGGACACCCTATACCGCTACGACCA
CAACAGTTACAGCGAACTAAGCCGGGACTCGGTATTCGAAAACCACGTCGAGGCCACTGTTCGGGGGCAGATTATGGCAG
GCTGGCGCGTCAGTCTTAAAGGCGAAGTCAGCGCCCGTCGTGGTGATAGCTACCAGACCAGCAGCAACACCCAGATGCCA
AATCAGAGCGCCATGCGCCAGTATTTTCTTGCCGACAGGGACAAGCGCGAACTTCGCTTGATGACAGACCATTATTTCGC
GGATGTATCGCTGCAATTCAATGTCCACTCGGGCAACGAAGACTACAGCGAGAGTGAGCTTGGCCTTGGCGAAGTGCAAT
ACACAGGTTTTGGCATGAATGCCGGCTATCCATTGACTGAACATCTGCTATTGAACGGATTTTTGGGCATGGACTGGCGT
GATACCACCCAGTTTGGCAGCAACTCCGGCGTCAGCCGCTGGACCGGCGAAAACCGGGATGAGCATACATCCGCCAGCCT
TGGGCTGAAATGGCAAAACCTGATGGACAACAAACTCAGCCTAGGGCTCGACTATGGTTACAGCGATGGCAACAGTGACA
CCGAAGTCAGCCTGGGCCTGTCAAACATCTACGGTCCCTACAGCGCAACCCGCCATAACGTCAGTGCTTATGCCAATTAC
CAGCTCAGCGATGCCATGTCGCTCCGCATCGATTGGCTTTATGAGAACTACAGCGACATGGATTGGGGCAACGACGGACT
CACACCGGACAGCATACCCAACCTGATCCTGCTTGGTTCACTGAGCCACGATTATCAGGCGCACTATCTCGGATTCAGTT
TCAGTTATCAGTGGTAA

Upstream 100 bases:

>100_bases
AGTGCCTTTACCGCCGGACAGAGCTGTATGAACTGCCACAGTCAGGTCCACGGCTCAAATCATCCATCCGGCAAGCTGCT
GCAGCGCTAAGGAGACTCAA

Downstream 100 bases:

>100_bases
CAGGCACGCAAGGAAGGAACGCAACCATGAGTATCAGCAAAAGAATAAGTATTAAACGCCTTTGCCGCCTGCCACTGGCG
GGAGCAACTCTGCTGGCACT

Product: outer membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein MtrB; Outer Membrane Protein MtrB

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA
DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ
TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE
PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR
TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR
DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY
QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW

Sequences:

>Translated_698_residues
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA
DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ
TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE
PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR
TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR
DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY
QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW
>Mature_698_residues
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA
DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ
TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE
PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR
TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR
DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY
QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 78284; Mature: 78284

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITA
CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHEECCCEECCCCCCEEEE
GVAWQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIK
EEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCEEEEEEHHHCCCCCCCCEEEEE
KPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLE
CCCCEEEEEEEEEHHEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEH
KKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
HHHHHHHCCCEECCCCHHHCCCCCHHHHCCHHHCCHHHHCCCEEEEECCCCCCCCEEEEE
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQF
EECCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCCHH
FEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREF
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
SVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLD
EEEEECCCCCCCCCCHHEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHH
TLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
HHHCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCEECCCCCCCCCCCCCCCC
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMN
CHHHHHHHHHCCCCCCCEEEEECEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCC
AGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLS
CCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEE
LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDM
EEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCC
DWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW
CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECC
>Mature Secondary Structure
MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITA
CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHEECCCEECCCCCCEEEE
GVAWQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIK
EEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCEEEEEEHHHCCCCCCCCEEEEE
KPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLE
CCCCEEEEEEEEEHHEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEH
KKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV
HHHHHHHCCCEECCCCHHHCCCCCHHHHCCHHHCCHHHHCCCEEEEECCCCCCCCEEEEE
YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQF
EECCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCCHH
FEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREF
HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE
SVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLD
EEEEECCCCCCCCCCHHEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHH
TLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP
HHHCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCEECCCCCCCCCCCCCCCC
NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMN
CHHHHHHHHHCCCCCCCEEEEECEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCC
AGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLS
CCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEE
LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDM
EEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCC
DWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW
CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA