| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774349
Identifier: 119774349
GI number: 119774349
Start: 1491000
End: 1493096
Strand: Reverse
Name: 119774349
Synonym: Sama_1212
Alternate gene names: NA
Gene position: 1493096-1491000 (Counterclockwise)
Preceding gene: 119774350
Following gene: 119774348
Centisome position: 34.67
GC content: 55.22
Gene sequence:
>2097_bases ATGAAACCCCATTTCTCCCCCACGCTGAGCCTGATAGCTTCCGCCATACTCCTGGGGATGTCCGGACAGGTCTTGGCGGG TTACGGCTTGAAAGACGCCAACCGCAGCACAGTAAAAAAAGAAGCCTGGGTTTGCAAAGGATGTGAAATCAAGTCGGAAT CCACCTCAGCCATCACCGCCGGCGTAGCCTGGCAGGACGGCGAAAACAGCCACTTTGCCAACACCACAGGCACAGACGCC GATGGAGCCACCGGTTTTGTCAGCGCCGACATTCAACACCGCGGCGACAAGGATTACCGACTCGACTTCCAGGCCGACAA GCTGGGATTTGATGCATCCAGCGCCAGGCTCGCCATCAAAAAGCCCGGCCACTACCAGTTTTATCTCGACTATCGTGCGC TCGCCCGGTACGACACCAATCAAGGCGTAACGCCTTACAGCGCTGAGGGCGACCTGCTGGTATTGCCGGATAACTGGCAA ACCGCCGGCACCACCGCAGGCATGACACGGCTGCAGGATGCACACACGGTGAAACTGGAGAAAAAACGTCAGCGCTTTGA ACTTGGCGGTGCCGTTACCGGTGACAGTTTTACCAGTGAACTCAACTTTCGGCACGAAACCCGCGAAGGCGCCCAGCGAA GCAGCGTTAACCTGCTGACCAATGCTGCCATGGTTGCCAAACCCATAGACGACAGCACAGACACCCTCGATGCCAAGGTA TATTGGCGCGGTGACAGGTTTTTGGGTGGCATCAACGGCCAGATAAGCAAATACAGTAACGATCATCAGCGTCTTGCATT CGACAACGCCTTCTACCCTACCTTTGGTGCAGCCTATAACGGGCAAATGGCGGTTGATCCAGATAATCAGGCGTTTAGCC TGGGAACCGACCTGCAGTTTTTTGAAGGGGCGCAGCAGGCCATTATGCGAGCACGCTTCAGCCACCTGACCCAGGATGAG CCGCTGCTGAATGCCACAGTAACCGGCCCATCTCCTGCATTGCCTGTCATGAGCCCGGATACTCAGGTGGACCTGATGGA GCTGGGGCTTGCATACAGCAACAGGCTCAGCCGGGAATTCTCGGTGCGCGCCTCATATGATTTTCGCGACCGCGACAATA AAACCCCCGAGTACCTCTACCCACTGGTCACAACCGACAGCATCTATCGTGGTGAGTACTACAACAAAGGCTACGACAGA ACCCGCCAGCTGCTGAAACTGGGTGCAAAATACCGCTTCAGCCGCCAATGGGATCTGGACACCCTATACCGCTACGACCA CAACAGTTACAGCGAACTAAGCCGGGACTCGGTATTCGAAAACCACGTCGAGGCCACTGTTCGGGGGCAGATTATGGCAG GCTGGCGCGTCAGTCTTAAAGGCGAAGTCAGCGCCCGTCGTGGTGATAGCTACCAGACCAGCAGCAACACCCAGATGCCA AATCAGAGCGCCATGCGCCAGTATTTTCTTGCCGACAGGGACAAGCGCGAACTTCGCTTGATGACAGACCATTATTTCGC GGATGTATCGCTGCAATTCAATGTCCACTCGGGCAACGAAGACTACAGCGAGAGTGAGCTTGGCCTTGGCGAAGTGCAAT ACACAGGTTTTGGCATGAATGCCGGCTATCCATTGACTGAACATCTGCTATTGAACGGATTTTTGGGCATGGACTGGCGT GATACCACCCAGTTTGGCAGCAACTCCGGCGTCAGCCGCTGGACCGGCGAAAACCGGGATGAGCATACATCCGCCAGCCT TGGGCTGAAATGGCAAAACCTGATGGACAACAAACTCAGCCTAGGGCTCGACTATGGTTACAGCGATGGCAACAGTGACA CCGAAGTCAGCCTGGGCCTGTCAAACATCTACGGTCCCTACAGCGCAACCCGCCATAACGTCAGTGCTTATGCCAATTAC CAGCTCAGCGATGCCATGTCGCTCCGCATCGATTGGCTTTATGAGAACTACAGCGACATGGATTGGGGCAACGACGGACT CACACCGGACAGCATACCCAACCTGATCCTGCTTGGTTCACTGAGCCACGATTATCAGGCGCACTATCTCGGATTCAGTT TCAGTTATCAGTGGTAA
Upstream 100 bases:
>100_bases AGTGCCTTTACCGCCGGACAGAGCTGTATGAACTGCCACAGTCAGGTCCACGGCTCAAATCATCCATCCGGCAAGCTGCT GCAGCGCTAAGGAGACTCAA
Downstream 100 bases:
>100_bases CAGGCACGCAAGGAAGGAACGCAACCATGAGTATCAGCAAAAGAATAAGTATTAAACGCCTTTGCCGCCTGCCACTGGCG GGAGCAACTCTGCTGGCACT
Product: outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein MtrB; Outer Membrane Protein MtrB
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW
Sequences:
>Translated_698_residues MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW >Mature_698_residues MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITAGVAWQDGENSHFANTTGTDA DGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIKKPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQ TAGTTAGMTRLQDAHTVKLEKKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQFFEGAQQAIMRARFSHLTQDE PLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREFSVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDR TRQLLKLGAKYRFSRQWDLDTLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMNAGYPLTEHLLLNGFLGMDWR DTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLSLGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANY QLSDAMSLRIDWLYENYSDMDWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78284; Mature: 78284
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITA CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHEECCCEECCCCCCEEEE GVAWQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIK EEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCEEEEEEHHHCCCCCCCCEEEEE KPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLE CCCCEEEEEEEEEHHEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEH KKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV HHHHHHHCCCEECCCCHHHCCCCCHHHHCCHHHCCHHHHCCCEEEEECCCCCCCCEEEEE YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQF EECCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCCHH FEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREF HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE SVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLD EEEEECCCCCCCCCCHHEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHH TLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP HHHCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCEECCCCCCCCCCCCCCCC NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMN CHHHHHHHHHCCCCCCCEEEEECEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCC AGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLS CCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEE LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDM EEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCC DWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECC >Mature Secondary Structure MKPHFSPTLSLIASAILLGMSGQVLAGYGLKDANRSTVKKEAWVCKGCEIKSESTSAITA CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHEECCCEECCCCCCEEEE GVAWQDGENSHFANTTGTDADGATGFVSADIQHRGDKDYRLDFQADKLGFDASSARLAIK EEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHCCCCCEEEEEEHHHCCCCCCCCEEEEE KPGHYQFYLDYRALARYDTNQGVTPYSAEGDLLVLPDNWQTAGTTAGMTRLQDAHTVKLE CCCCEEEEEEEEEHHEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEH KKRQRFELGGAVTGDSFTSELNFRHETREGAQRSSVNLLTNAAMVAKPIDDSTDTLDAKV HHHHHHHCCCEECCCCHHHCCCCCHHHHCCHHHCCHHHHCCCEEEEECCCCCCCCEEEEE YWRGDRFLGGINGQISKYSNDHQRLAFDNAFYPTFGAAYNGQMAVDPDNQAFSLGTDLQF EECCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEEEECCCCHH FEGAQQAIMRARFSHLTQDEPLLNATVTGPSPALPVMSPDTQVDLMELGLAYSNRLSREF HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE SVRASYDFRDRDNKTPEYLYPLVTTDSIYRGEYYNKGYDRTRQLLKLGAKYRFSRQWDLD EEEEECCCCCCCCCCHHEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCCEECCCCCHH TLYRYDHNSYSELSRDSVFENHVEATVRGQIMAGWRVSLKGEVSARRGDSYQTSSNTQMP HHHCCCCCCHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCEECCCCCCCCCCCCCCCC NQSAMRQYFLADRDKRELRLMTDHYFADVSLQFNVHSGNEDYSESELGLGEVQYTGFGMN CHHHHHHHHHCCCCCCCEEEEECEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCC AGYPLTEHLLLNGFLGMDWRDTTQFGSNSGVSRWTGENRDEHTSASLGLKWQNLMDNKLS CCCCHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCEE LGLDYGYSDGNSDTEVSLGLSNIYGPYSATRHNVSAYANYQLSDAMSLRIDWLYENYSDM EEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCC DWGNDGLTPDSIPNLILLGSLSHDYQAHYLGFSFSYQW CCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA