| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774303
Identifier: 119774303
GI number: 119774303
Start: 1421126
End: 1422385
Strand: Reverse
Name: 119774303
Synonym: Sama_1166
Alternate gene names: NA
Gene position: 1422385-1421126 (Counterclockwise)
Preceding gene: 119774304
Following gene: 119774302
Centisome position: 33.03
GC content: 56.67
Gene sequence:
>1260_bases ATGAGAATCCTGACCCTACCCCTGCTCCTGACAAGCGTTTGCGGCCTGGCCCACGATATGGTGCCCGGCACGGCGCAGCA GCAAGCCATATTGTTTACCCATGCCACAGTGCATACTGCCTCGAATGGGGTGCTTGAAAACACCAACGTCTTGGTTGAGA ACGGCCGCATCGCGGCCATGGGCGAGCAAATTCAGGCTGCCAATGCCCGGGTGATAGACGCCACTGGCAAACACCTCTAC CCCGGGCTGATTGCTCTCGATACCCAAGTGGGTATGGTAGAAATTGAGATGGTGCGCCCCACTGTGGACACTCAGGATGT GGGCCTCAACAATGCTGAACTCAAGGCCTCATCGGTGTTTAACCCTGACTCCGAGATTATCCCGACCCTGCGCAAAAATG GCATCACACACGCACAAATCGTGCCCCGTGGTGAACTGCTTGCCGGGCAAAGCGCGCTGGTGAATCTCGACAGCTGGACA GTGGAAGATGCCCTGGTCGACTCGCCCGCGGCACTGCACCTCTACTGGCCGGAGCTTGGCAATCTGCCGGTAAAAGATGA AGAGCGCAGCAAGGCACTCACTGCCCACGGCGAAGCCCTGGCACAAATCGATACGCTCTTTAGTGAGGCCAGTGCCTTTG TCCAGCGCAAAGCCGCAGAGCCCAGCCTTACCCACAGGCGCTTTGAAGCCATGGCACCGCTCTTTCGTGGTGACACAACC TTGTTCCTCCATGCCAATACCGCAGGTGCCATCGGTGAAGTACTCACCTTTGTTAAAAAGTACCAACTCAAAGCCGTGTT GGTGGGTGGTTATGAAGCCTGGCACCATGGGGATGCTATCAAGGCCGCAGGCATTGCTGTGGTATACCCTTCGGTATTCA GCCTGCCCAGATACCGGGACGACAATATCGACGAAGCCTTCAGTATTCCCGCCCGCCTGGCTGATGCAGGTATCGACTTT GCCATTGGCTACAGCGGCGATTGGGATGCACGTAATCTGCCCTATGCCGCAGGATACGCCGCAGCCCATGGTTTAGGGAA AGAAGCGGCGCTCAAAGCGGTCACCCTCAATGCCGCCCGTATCCTTGGGGTGTCAGATATGGGCGCTATCGAGGTGGGGT ACCGAGCCAATCTGGTACTCTCTGGCGGGGATATTCTCGACCCTCTCAGCAGCCGTATCGAGCAGGTATTTATCGATGGC CGTGAGATAACCCTGAAAACCCGCGCCGATCAGCTTTATCAAAAGTATCTGAAGCGATAG
Upstream 100 bases:
>100_bases AAAAACAAGAGCCGTTATGGCATTGCGATAGTCATTACATCGCCTTTGGCACCCGGGCCAGTCATCTGGGTGCCCAACAT CAGCATCAAGGAGCACACTA
Downstream 100 bases:
>100_bases AATTTTGGCATTCAAGGCCGGGCTGGAATGTCTCCGCCCCGCTCCCGAAAGGATCCCATCATGACCCCACACCCGTTGAA AGCCGCCGCAGCCATCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Amidohydrolase Family Protein; Metal-Dependent Hydrolase Superfamily Protein; Imidazolonepropionase; Imidazolonepropionase And Related Amidohydrolases; Dihydroorotase; Amidohydrolase Protein; Secreted; Amidohodrolase; Amidohydrolase Imidazolonepropionase; Imidazolonepropionase Or Related Amidohydrolase; Imidazolone-5-Propionate Hydrolase; Aminohydrolase; Secreted Protein
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG REITLKTRADQLYQKYLKR
Sequences:
>Translated_419_residues MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG REITLKTRADQLYQKYLKR >Mature_419_residues MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG REITLKTRADQLYQKYLKR
Specific function: Unknown
COG id: COG1228
COG function: function code Q; Imidazolonepropionase and related amidohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45110; Mature: 45110
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAM CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEECCEEEEECCEEEEE GEQIQAANARVIDATGKHLYPGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVF CCHHHHCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEECCCC NPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWTVEDALVDSPAALHLYWPELG CCCHHHHHHHHHCCCCEEEEECCCCEEECCCCEEECCCCEEHHHHCCCCCEEEEECCCCC NLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRD EEEECCCCHHHHHHHHHHHHHEEEEEEEECCHHHCCCCCHHHCCEEEECCHHHCCCCCCC DNIDEAFSIPARLADAGIDFAIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAAR CCCCHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHEEEEEECHHE ILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDGREITLKTRADQLYQKYLKR EECCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECHHHHHHHHHHCC >Mature Secondary Structure MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAM CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEECCEEEEECCEEEEE GEQIQAANARVIDATGKHLYPGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVF CCHHHHCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEECCCC NPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWTVEDALVDSPAALHLYWPELG CCCHHHHHHHHHCCCCEEEEECCCCEEECCCCEEECCCCEEHHHHCCCCCEEEEECCCCC NLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRD EEEECCCCHHHHHHHHHHHHHEEEEEEEECCHHHCCCCCHHHCCEEEECCHHHCCCCCCC DNIDEAFSIPARLADAGIDFAIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAAR CCCCHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHEEEEEECHHE ILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDGREITLKTRADQLYQKYLKR EECCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA