Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774303

Identifier: 119774303

GI number: 119774303

Start: 1421126

End: 1422385

Strand: Reverse

Name: 119774303

Synonym: Sama_1166

Alternate gene names: NA

Gene position: 1422385-1421126 (Counterclockwise)

Preceding gene: 119774304

Following gene: 119774302

Centisome position: 33.03

GC content: 56.67

Gene sequence:

>1260_bases
ATGAGAATCCTGACCCTACCCCTGCTCCTGACAAGCGTTTGCGGCCTGGCCCACGATATGGTGCCCGGCACGGCGCAGCA
GCAAGCCATATTGTTTACCCATGCCACAGTGCATACTGCCTCGAATGGGGTGCTTGAAAACACCAACGTCTTGGTTGAGA
ACGGCCGCATCGCGGCCATGGGCGAGCAAATTCAGGCTGCCAATGCCCGGGTGATAGACGCCACTGGCAAACACCTCTAC
CCCGGGCTGATTGCTCTCGATACCCAAGTGGGTATGGTAGAAATTGAGATGGTGCGCCCCACTGTGGACACTCAGGATGT
GGGCCTCAACAATGCTGAACTCAAGGCCTCATCGGTGTTTAACCCTGACTCCGAGATTATCCCGACCCTGCGCAAAAATG
GCATCACACACGCACAAATCGTGCCCCGTGGTGAACTGCTTGCCGGGCAAAGCGCGCTGGTGAATCTCGACAGCTGGACA
GTGGAAGATGCCCTGGTCGACTCGCCCGCGGCACTGCACCTCTACTGGCCGGAGCTTGGCAATCTGCCGGTAAAAGATGA
AGAGCGCAGCAAGGCACTCACTGCCCACGGCGAAGCCCTGGCACAAATCGATACGCTCTTTAGTGAGGCCAGTGCCTTTG
TCCAGCGCAAAGCCGCAGAGCCCAGCCTTACCCACAGGCGCTTTGAAGCCATGGCACCGCTCTTTCGTGGTGACACAACC
TTGTTCCTCCATGCCAATACCGCAGGTGCCATCGGTGAAGTACTCACCTTTGTTAAAAAGTACCAACTCAAAGCCGTGTT
GGTGGGTGGTTATGAAGCCTGGCACCATGGGGATGCTATCAAGGCCGCAGGCATTGCTGTGGTATACCCTTCGGTATTCA
GCCTGCCCAGATACCGGGACGACAATATCGACGAAGCCTTCAGTATTCCCGCCCGCCTGGCTGATGCAGGTATCGACTTT
GCCATTGGCTACAGCGGCGATTGGGATGCACGTAATCTGCCCTATGCCGCAGGATACGCCGCAGCCCATGGTTTAGGGAA
AGAAGCGGCGCTCAAAGCGGTCACCCTCAATGCCGCCCGTATCCTTGGGGTGTCAGATATGGGCGCTATCGAGGTGGGGT
ACCGAGCCAATCTGGTACTCTCTGGCGGGGATATTCTCGACCCTCTCAGCAGCCGTATCGAGCAGGTATTTATCGATGGC
CGTGAGATAACCCTGAAAACCCGCGCCGATCAGCTTTATCAAAAGTATCTGAAGCGATAG

Upstream 100 bases:

>100_bases
AAAAACAAGAGCCGTTATGGCATTGCGATAGTCATTACATCGCCTTTGGCACCCGGGCCAGTCATCTGGGTGCCCAACAT
CAGCATCAAGGAGCACACTA

Downstream 100 bases:

>100_bases
AATTTTGGCATTCAAGGCCGGGCTGGAATGTCTCCGCCCCGCTCCCGAAAGGATCCCATCATGACCCCACACCCGTTGAA
AGCCGCCGCAGCCATCGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Amidohydrolase Family Protein; Metal-Dependent Hydrolase Superfamily Protein; Imidazolonepropionase; Imidazolonepropionase And Related Amidohydrolases; Dihydroorotase; Amidohydrolase Protein; Secreted; Amidohodrolase; Amidohydrolase Imidazolonepropionase; Imidazolonepropionase Or Related Amidohydrolase; Imidazolone-5-Propionate Hydrolase; Aminohydrolase; Secreted Protein

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY
PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT
VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT
LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF
AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG
REITLKTRADQLYQKYLKR

Sequences:

>Translated_419_residues
MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY
PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT
VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT
LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF
AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG
REITLKTRADQLYQKYLKR
>Mature_419_residues
MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAMGEQIQAANARVIDATGKHLY
PGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVFNPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWT
VEDALVDSPAALHLYWPELGNLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT
LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRDDNIDEAFSIPARLADAGIDF
AIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAARILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDG
REITLKTRADQLYQKYLKR

Specific function: Unknown

COG id: COG1228

COG function: function code Q; Imidazolonepropionase and related amidohydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45110; Mature: 45110

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAM
CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEECCEEEEECCEEEEE
GEQIQAANARVIDATGKHLYPGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVF
CCHHHHCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEECCCC
NPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWTVEDALVDSPAALHLYWPELG
CCCHHHHHHHHHCCCCEEEEECCCCEEECCCCEEECCCCEEHHHHCCCCCEEEEECCCCC
NLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE
LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRD
EEEECCCCHHHHHHHHHHHHHEEEEEEEECCHHHCCCCCHHHCCEEEECCHHHCCCCCCC
DNIDEAFSIPARLADAGIDFAIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAAR
CCCCHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHEEEEEECHHE
ILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDGREITLKTRADQLYQKYLKR
EECCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MRILTLPLLLTSVCGLAHDMVPGTAQQQAILFTHATVHTASNGVLENTNVLVENGRIAAM
CEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCEEECCEEEEECCEEEEE
GEQIQAANARVIDATGKHLYPGLIALDTQVGMVEIEMVRPTVDTQDVGLNNAELKASSVF
CCHHHHCCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEECCCC
NPDSEIIPTLRKNGITHAQIVPRGELLAGQSALVNLDSWTVEDALVDSPAALHLYWPELG
CCCHHHHHHHHHCCCCEEEEECCCCEEECCCCEEECCCCEEHHHHCCCCCEEEEECCCCC
NLPVKDEERSKALTAHGEALAQIDTLFSEASAFVQRKAAEPSLTHRRFEAMAPLFRGDTT
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEE
LFLHANTAGAIGEVLTFVKKYQLKAVLVGGYEAWHHGDAIKAAGIAVVYPSVFSLPRYRD
EEEECCCCHHHHHHHHHHHHHEEEEEEEECCHHHCCCCCHHHCCEEEECCHHHCCCCCCC
DNIDEAFSIPARLADAGIDFAIGYSGDWDARNLPYAAGYAAAHGLGKEAALKAVTLNAAR
CCCCHHHHCCHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHEEEEEECHHE
ILGVSDMGAIEVGYRANLVLSGGDILDPLSSRIEQVFIDGREITLKTRADQLYQKYLKR
EECCCCCCEEEECCEEEEEEECCCHHHHHHHHHHHHEECCCEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA