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The map label for this gene is skp [H]

Identifier: 119774285

GI number: 119774285

Start: 1399321

End: 1399827

Strand: Direct

Name: skp [H]

Synonym: Sama_1148

Alternate gene names: 119774285

Gene position: 1399321-1399827 (Clockwise)

Preceding gene: 119774284

Following gene: 119774286

Centisome position: 32.5

GC content: 52.27

Gene sequence:

>507_bases
TTGAACAAGATGCTTAACCGTGCACTCGTGACTCTGATGCTGATTGGCGCGCCACTGGCTGCCAATGCAGAGAAAATTGC
TGTCGTTGATATGGGTGCCGTGTTTGAACAGCTGCCTCAGCGTGAAGCGATTGGTAAGGCACTGGAAAAAGAATTTGGCG
ACCGTGAAGCCGAAGTGAAAAAGCTGCAGGGTGATCTGCGCAGCCTGATGGAGAAAAACCAGCGTGATGCAGCGCTGATG
AGTGAAACTCAGAAGACTGAGGCGCTGCGCAAGATGGAAGCGCTTCAGGCCGATCTGCAACTGAAGGGCAAAGCCCTGCA
GGAAGACGTTCGTCGTCGTCAGGCCGAAGAGCAGAACAAGATCCTGGTTAAGGTTCAGCAAGTCATCAAAGACATCGCCG
AAAAGGAACAAATCGATGTCGTGATGCAAAGCGGTGCAGTCGTGTTTGCCAAGCCTCAGCTTGATATCTCCAGCAAGGTA
GTAGAAGCGCTGGGCAAGGCCAAGTAA

Upstream 100 bases:

>100_bases
ACGACGAGACCGAGATCTTCTCCTTCAATATTGGCAAAACTTTCTAAAACACATACACTCGGCGACGATTGTGACAAAAC
ACCACAACAAGGAGTTTATT

Downstream 100 bases:

>100_bases
TAAATGAAGCAAGTGACTCTGGGCCAATTGGCCGAACATTTGGGAGCAGAACTCAAGGGCGATGGCAGTTTACTGATCTC
TTCAGTGGCCACCCTTGAAG

Product: outer membrane protein OmpH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNKMLNRALVTLMLIGAPLAANAEKIAVVDMGAVFEQLPQREAIGKALEKEFGDREAEVKKLQGDLRSLMEKNQRDAALM
SETQKTEALRKMEALQADLQLKGKALQEDVRRRQAEEQNKILVKVQQVIKDIAEKEQIDVVMQSGAVVFAKPQLDISSKV
VEALGKAK

Sequences:

>Translated_168_residues
MNKMLNRALVTLMLIGAPLAANAEKIAVVDMGAVFEQLPQREAIGKALEKEFGDREAEVKKLQGDLRSLMEKNQRDAALM
SETQKTEALRKMEALQADLQLKGKALQEDVRRRQAEEQNKILVKVQQVIKDIAEKEQIDVVMQSGAVVFAKPQLDISSKV
VEALGKAK
>Mature_168_residues
MNKMLNRALVTLMLIGAPLAANAEKIAVVDMGAVFEQLPQREAIGKALEKEFGDREAEVKKLQGDLRSLMEKNQRDAALM
SETQKTEALRKMEALQADLQLKGKALQEDVRRRQAEEQNKILVKVQQVIKDIAEKEQIDVVMQSGAVVFAKPQLDISSKV
VEALGKAK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=141, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18666; Mature: 18666

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKMLNRALVTLMLIGAPLAANAEKIAVVDMGAVFEQLPQREAIGKALEKEFGDREAEVK
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
KLQGDLRSLMEKNQRDAALMSETQKTEALRKMEALQADLQLKGKALQEDVRRRQAEEQNK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILVKVQQVIKDIAEKEQIDVVMQSGAVVFAKPQLDISSKVVEALGKAK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNKMLNRALVTLMLIGAPLAANAEKIAVVDMGAVFEQLPQREAIGKALEKEFGDREAEVK
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
KLQGDLRSLMEKNQRDAALMSETQKTEALRKMEALQADLQLKGKALQEDVRRRQAEEQNK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILVKVQQVIKDIAEKEQIDVVMQSGAVVFAKPQLDISSKVVEALGKAK
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]