| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is glnD [H]
Identifier: 119774274
GI number: 119774274
Start: 1385608
End: 1388178
Strand: Reverse
Name: glnD [H]
Synonym: Sama_1137
Alternate gene names: 119774274
Gene position: 1388178-1385608 (Counterclockwise)
Preceding gene: 119774275
Following gene: 119774273
Centisome position: 32.24
GC content: 54.61
Gene sequence:
>2571_bases ATGACGACGGCTCAGCAGGCCAAAGCCTCTTTGCAGGCGCTGAATCAGGAACTGGCGCTGGCCTTCGCGGCCCGTGAAGA TGTTGTCGAACTGGTCAGGCGCCGCTGCCGGGTCGTCGATGAATTACTCCAAACCGCCTGGAGCCAACATGGTCTGGGCA ATTACCCCATCGCCCTGGTTGCGGTGGGGGGGTATGGTCGTGGTGAGCTGCATCCCCACTCAGACATAGATCTGTTGATG TTAGTGGATGAAAAGCTCCCCAAAGAAGCCGAGTTTGTGCTCGGCTACTTTATTGCCTTCTTGTGGGACGCGGGCCTCGA GATTGGCCACAGCGTTCGCACCATTAAAGATACCCTTACCCTCGGCCGGGACGATATCACCATCGCCACCAACTTGTTGG AGGCACGCTTTCTCACCGGCACAGAGCCCCTGTTTGATGAGCTTTACGATGCCATCCGCACCCAGGATTTTTGGCCATCC AGCGACTTTTTTGTGGCCAAGCGGGATGAGCAGCAGGCCCGGCACACCAAGGCCAGCGCATTCGATTTAGAGCCCAACGT CAAGAGTTGCCCGGGTGGCCTTCGCGATATCCAAACCGTGGCCTGGGTCGCCATGCGTCACTTCAACGCCTCGCGTCTGG AGGAGTTGGTCGGACATGGTTTCCTTGAGCCCATAGAGCTTGAGGAGTTACTCGAGTGTCAGCAGTTTTTGTGGCAAATC CGCTTTGCCCTGCACATTGCCTCTGGACGTGACGAAAACCGCCTGCTCTTCGACCTGCAGCGCCAGGTCGCAGAACTTTT GGGATACGAAGACAAGACCCAGCTTGCCGTCGAACAGATGATGAAGCTCTACTACCGCACCGTTCGGCGGGTAATGGAGC TCAATGAAATGCTGCTGCAGCTTTTCAAACGCGCAACATTGGGCCACACCAAGGCATTGGAAATCGTCCCGATAAACGAC AACTTTCAACGTCGTGGCAGCTTTATAGAGGCCCTCTCGGCCAATCCGTTTGTGAAGCCGGAAGACATCATGGGGCTGTT TCTGCTGATAGCCCGCAACTCCAATATCCGCGGTATCTACGCCCCTACCCTGCGCTCCATGCGCCAGGCCCGAAAAGCGC TCACCCAACCACTGATGGAATACGCAGAATGCCGTCAGGTATTCATGGAAATCCTGCGCCATCCACGGGGTATTTCGGCG TTTTCCCTGATGCACAAGCACGGCATTCTGTCTGCCTATTTGCCCGCCTGGCGCGCCATTGAAGGCCAGATGCAGTTCGA TCTCTTTCACGCCTATACAGTGGATGAACACACCCACAGGCTGTTGCTCAATATCGAGCGCTTTTCGCAGCCTGAGCAAA AAGATGAGTTCCCCTTGGGGTCTGTGCTGATTAATCAGCTACCGAAAAAGGGGCTGCTGGTACTCGCGGCCATCTTCCAT GACATTGCCAAGGGCCGTGGTGGCGATCACAGTAAACTCGGCGCCGTGGATGCGCTGGCGTTTTGTAAGTCCCATGGCCT GAACGATCATGACGGCCGCTTGGTGAGCTGGCTGGTTGAAAACCATCTGATGATGTCGGTAACAGCCCAAAGGCGGGATA TTTCTGACCCCGATGTGGTAGCGGATTTTGCCGGTAAGGTGCGCGATGCGGTGCACTTGAGCTATCTCTACTGCCTGACG GTGGCTGATATCTGCGCCACCAACGAAAAAACCTGGAACAACTGGAAGGGCTCACTACTGAGGGATCTGTACTTTTCAAC CCAAAGGGTTCTGGCACGGGGCAAAGAAAAACCGGTAGATATCCGCGCCCGGGTACGGGAATACCAGGCCAAGGCGAAAA AGGAGCTGCTACGTCGCGGCGTGAAGGAAAAAGAACTTGATGCCCTGTGGGCCAGGTTCAAAGCCGATTACTTTTTGCGC CATCAACCCAATCAAATCGCCTGGCATGCTGAGGGCATCCTTAAACACCGCCAGGATGAGCCGCTGGTGCTGATCTCTAA ACACACAACCCGTGGCGGCACCGAGCTATTTGTTTACTGCCGCGACAAGCCCAAGCTGTTCGCCACCGTGATGGCGGTAT TGGACAACAAAAACATCAATGTCCACGATGCGACTGTAATGACCTCCAAGGATAACTATGCCCTGGACAGCTTTGTGATT CTTGAGCAGGATGGCGAACCCCTGATGCAGCTGTCGCGTATCCAGAGCATTCGCAAGGGGCTTGAAAAGGCACTTGCCAG TGAAAACCCCAGACCGACAAAGTTCCGTAAGCTTTCCCGCAAGATGAAACCTTTTAACGTACCAACACAGGTCAGTTTTC TGCCGGGTAGCCGTCATGGTACAAGTATGATGGAACTTATCGCTCTGGATATGCCCGGTCTGCTCGCAAGAGTGGGTGAC ATCTTCTATCGCTGTGAGATAACCTTGCTGGCAGCAAAAATCACCACTATCGGTGAGCGGGCTGAAGACTTTTTCGTACT GCAAACCAATGACGGTCAAGCCCTCAGTGACGAGGAACAGCGACGGCTTAAAGAGGCACTGGTCAGTGCCCTGTCCCAGA CAATTTTTTAA
Upstream 100 bases:
>100_bases ACGAACACACTCTCTTGGTAACCGAGACGGGTGTGGAAGTACTCACCCTGCGCAGCGAAGAAGATTTCCCACGCATAATC AATCACAAATAAGGCAATCC
Downstream 100 bases:
>100_bases CACCTTATCAAAACGGGAGAACCCACATGGAGGCTTTACGCCAGCGTATCGAGGCGGCTTTTGAAGCTCGCGCAAACATC ACCCCAAGCAGTGTCGAGCC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MTTAQQAKASLQALNQELALAFAAREDVVELVRRRCRVVDELLQTAWSQHGLGNYPIALVAVGGYGRGELHPHSDIDLLM LVDEKLPKEAEFVLGYFIAFLWDAGLEIGHSVRTIKDTLTLGRDDITIATNLLEARFLTGTEPLFDELYDAIRTQDFWPS SDFFVAKRDEQQARHTKASAFDLEPNVKSCPGGLRDIQTVAWVAMRHFNASRLEELVGHGFLEPIELEELLECQQFLWQI RFALHIASGRDENRLLFDLQRQVAELLGYEDKTQLAVEQMMKLYYRTVRRVMELNEMLLQLFKRATLGHTKALEIVPIND NFQRRGSFIEALSANPFVKPEDIMGLFLLIARNSNIRGIYAPTLRSMRQARKALTQPLMEYAECRQVFMEILRHPRGISA FSLMHKHGILSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKDEFPLGSVLINQLPKKGLLVLAAIFH DIAKGRGGDHSKLGAVDALAFCKSHGLNDHDGRLVSWLVENHLMMSVTAQRRDISDPDVVADFAGKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDALWARFKADYFLR HQPNQIAWHAEGILKHRQDEPLVLISKHTTRGGTELFVYCRDKPKLFATVMAVLDNKNINVHDATVMTSKDNYALDSFVI LEQDGEPLMQLSRIQSIRKGLEKALASENPRPTKFRKLSRKMKPFNVPTQVSFLPGSRHGTSMMELIALDMPGLLARVGD IFYRCEITLLAAKITTIGERAEDFFVLQTNDGQALSDEEQRRLKEALVSALSQTIF
Sequences:
>Translated_856_residues MTTAQQAKASLQALNQELALAFAAREDVVELVRRRCRVVDELLQTAWSQHGLGNYPIALVAVGGYGRGELHPHSDIDLLM LVDEKLPKEAEFVLGYFIAFLWDAGLEIGHSVRTIKDTLTLGRDDITIATNLLEARFLTGTEPLFDELYDAIRTQDFWPS SDFFVAKRDEQQARHTKASAFDLEPNVKSCPGGLRDIQTVAWVAMRHFNASRLEELVGHGFLEPIELEELLECQQFLWQI RFALHIASGRDENRLLFDLQRQVAELLGYEDKTQLAVEQMMKLYYRTVRRVMELNEMLLQLFKRATLGHTKALEIVPIND NFQRRGSFIEALSANPFVKPEDIMGLFLLIARNSNIRGIYAPTLRSMRQARKALTQPLMEYAECRQVFMEILRHPRGISA FSLMHKHGILSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKDEFPLGSVLINQLPKKGLLVLAAIFH DIAKGRGGDHSKLGAVDALAFCKSHGLNDHDGRLVSWLVENHLMMSVTAQRRDISDPDVVADFAGKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDALWARFKADYFLR HQPNQIAWHAEGILKHRQDEPLVLISKHTTRGGTELFVYCRDKPKLFATVMAVLDNKNINVHDATVMTSKDNYALDSFVI LEQDGEPLMQLSRIQSIRKGLEKALASENPRPTKFRKLSRKMKPFNVPTQVSFLPGSRHGTSMMELIALDMPGLLARVGD IFYRCEITLLAAKITTIGERAEDFFVLQTNDGQALSDEEQRRLKEALVSALSQTIF >Mature_855_residues TTAQQAKASLQALNQELALAFAAREDVVELVRRRCRVVDELLQTAWSQHGLGNYPIALVAVGGYGRGELHPHSDIDLLML VDEKLPKEAEFVLGYFIAFLWDAGLEIGHSVRTIKDTLTLGRDDITIATNLLEARFLTGTEPLFDELYDAIRTQDFWPSS DFFVAKRDEQQARHTKASAFDLEPNVKSCPGGLRDIQTVAWVAMRHFNASRLEELVGHGFLEPIELEELLECQQFLWQIR FALHIASGRDENRLLFDLQRQVAELLGYEDKTQLAVEQMMKLYYRTVRRVMELNEMLLQLFKRATLGHTKALEIVPINDN FQRRGSFIEALSANPFVKPEDIMGLFLLIARNSNIRGIYAPTLRSMRQARKALTQPLMEYAECRQVFMEILRHPRGISAF SLMHKHGILSAYLPAWRAIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKDEFPLGSVLINQLPKKGLLVLAAIFHD IAKGRGGDHSKLGAVDALAFCKSHGLNDHDGRLVSWLVENHLMMSVTAQRRDISDPDVVADFAGKVRDAVHLSYLYCLTV ADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDALWARFKADYFLRH QPNQIAWHAEGILKHRQDEPLVLISKHTTRGGTELFVYCRDKPKLFATVMAVLDNKNINVHDATVMTSKDNYALDSFVIL EQDGEPLMQLSRIQSIRKGLEKALASENPRPTKFRKLSRKMKPFNVPTQVSFLPGSRHGTSMMELIALDMPGLLARVGDI FYRCEITLLAAKITTIGERAEDFFVLQTNDGQALSDEEQRRLKEALVSALSQTIF
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=850, Percent_Identity=49.2941176470588, Blast_Score=820, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 97587; Mature: 97456
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAQQAKASLQALNQELALAFAAREDVVELVRRRCRVVDELLQTAWSQHGLGNYPIALV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AVGGYGRGELHPHSDIDLLMLVDEKLPKEAEFVLGYFIAFLWDAGLEIGHSVRTIKDTLT EECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LGRDDITIATNLLEARFLTGTEPLFDELYDAIRTQDFWPSSDFFVAKRDEQQARHTKASA CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCC FDLEPNVKSCPGGLRDIQTVAWVAMRHFNASRLEELVGHGFLEPIELEELLECQQFLWQI CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH RFALHIASGRDENRLLFDLQRQVAELLGYEDKTQLAVEQMMKLYYRTVRRVMELNEMLLQ HHHHHEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHTKALEIVPINDNFQRRGSFIEALSANPFVKPEDIMGLFLLIARNSNIRGIY HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCEEE APTLRSMRQARKALTQPLMEYAECRQVFMEILRHPRGISAFSLMHKHGILSAYLPAWRAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHH EGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKDEFPLGSVLINQLPKKGLLVLAAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGAVDALAFCKSHGLNDHDGRLVSWLVENHLMMSVTAQRRDISDPDVV HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHEEEEHHHCCCCCCHHH ADFAGKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGVKEKELDALWARFKADYFLRHQPNQIAWHAEGILKHRQDE HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHCCCCC PLVLISKHTTRGGTELFVYCRDKPKLFATVMAVLDNKNINVHDATVMTSKDNYALDSFVI CEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEE LEQDGEPLMQLSRIQSIRKGLEKALASENPRPTKFRKLSRKMKPFNVPTQVSFLPGSRHG EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC TSMMELIALDMPGLLARVGDIFYRCEITLLAAKITTIGERAEDFFVLQTNDGQALSDEEQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH RRLKEALVSALSQTIF HHHHHHHHHHHHHHCC >Mature Secondary Structure TTAQQAKASLQALNQELALAFAAREDVVELVRRRCRVVDELLQTAWSQHGLGNYPIALV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AVGGYGRGELHPHSDIDLLMLVDEKLPKEAEFVLGYFIAFLWDAGLEIGHSVRTIKDTLT EECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LGRDDITIATNLLEARFLTGTEPLFDELYDAIRTQDFWPSSDFFVAKRDEQQARHTKASA CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHCCC FDLEPNVKSCPGGLRDIQTVAWVAMRHFNASRLEELVGHGFLEPIELEELLECQQFLWQI CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH RFALHIASGRDENRLLFDLQRQVAELLGYEDKTQLAVEQMMKLYYRTVRRVMELNEMLLQ HHHHHEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGHTKALEIVPINDNFQRRGSFIEALSANPFVKPEDIMGLFLLIARNSNIRGIY HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCEEE APTLRSMRQARKALTQPLMEYAECRQVFMEILRHPRGISAFSLMHKHGILSAYLPAWRAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHH EGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKDEFPLGSVLINQLPKKGLLVLAAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGAVDALAFCKSHGLNDHDGRLVSWLVENHLMMSVTAQRRDISDPDVV HHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHEEEEHHHCCCCCCHHH ADFAGKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGVKEKELDALWARFKADYFLRHQPNQIAWHAEGILKHRQDE HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHCCCCC PLVLISKHTTRGGTELFVYCRDKPKLFATVMAVLDNKNINVHDATVMTSKDNYALDSFVI CEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEE LEQDGEPLMQLSRIQSIRKGLEKALASENPRPTKFRKLSRKMKPFNVPTQVSFLPGSRHG EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC TSMMELIALDMPGLLARVGDIFYRCEITLLAAKITTIGERAEDFFVLQTNDGQALSDEEQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH RRLKEALVSALSQTIF HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]