| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774262
Identifier: 119774262
GI number: 119774262
Start: 1374946
End: 1375176
Strand: Reverse
Name: 119774262
Synonym: Sama_1125
Alternate gene names: NA
Gene position: 1375176-1374946 (Counterclockwise)
Preceding gene: 119774265
Following gene: 119774260
Centisome position: 31.94
GC content: 50.22
Gene sequence:
>231_bases ATGGATACAACCCCCGTGGATCTCAGTCATTTATTTGAACAGTTGGGGCTGGACAGCAGTGATAAGGCCATCGGCCTGTT TATTGAAAAGCATACTATAGGTGCCGACCTGGCCATTTGGCAGGCAGACTTCTGGACGCCGGCACAAGCCGGGTTTTTAA GAGAATCGCTGGAAATGGATGCCAACTGGTCAGAACTCATTGACCTGTTGGACACCCGGCTACGTAAATAG
Upstream 100 bases:
>100_bases CAATGTAACAAGCCTTGAAAAAAGTGCAATTATTAATCGAGTTTGCCTTTTTAACGCGAGCAATCAATTATTAACCCATG GTGTCGGCCGGAGGAAGACT
Downstream 100 bases:
>100_bases CTCAGCCCCGGCGATAGGCGGTTTCACCCCAGCCAACCAAACGGTTATCGTGCAGTACTACAGGAGTGCATTCTTCTTTG GTGGTGCTGCCATCACCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 76; Mature: 76
Protein sequence:
>76_residues MDTTPVDLSHLFEQLGLDSSDKAIGLFIEKHTIGADLAIWQADFWTPAQAGFLRESLEMDANWSELIDLLDTRLRK
Sequences:
>Translated_76_residues MDTTPVDLSHLFEQLGLDSSDKAIGLFIEKHTIGADLAIWQADFWTPAQAGFLRESLEMDANWSELIDLLDTRLRK >Mature_76_residues MDTTPVDLSHLFEQLGLDSSDKAIGLFIEKHTIGADLAIWQADFWTPAQAGFLRESLEMDANWSELIDLLDTRLRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8619; Mature: 8619
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTTPVDLSHLFEQLGLDSSDKAIGLFIEKHTIGADLAIWQADFWTPAQAGFLRESLEMD CCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHCCC ANWSELIDLLDTRLRK CCHHHHHHHHHHHHCC >Mature Secondary Structure MDTTPVDLSHLFEQLGLDSSDKAIGLFIEKHTIGADLAIWQADFWTPAQAGFLRESLEMD CCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHCCC ANWSELIDLLDTRLRK CCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA