Click here to switch to the map view.

The map label for this gene is 119774251

Identifier: 119774251

GI number: 119774251

Start: 1357155

End: 1359218

Strand: Reverse

Name: 119774251

Synonym: Sama_1114

Alternate gene names: NA

Gene position: 1359218-1357155 (Counterclockwise)

Preceding gene: 119774252

Following gene: 119774250

Centisome position: 31.56

GC content: 63.47

Gene sequence:

>2064_bases
ATGATGTCAGTGAAGACGCCCCCCCTGAGATTGGCGCTGTGCCGGGTGCAACGCTGCCCGAACGATGCCGTAAGGATCAC
CGCCAGCGAACCCGACTGGCACGCCCTGATTGAAGAGGCACAAAAGGGTTCAACCATCGCACTGGGTGAAGACGGCACCC
TGCTGATGCTGCCGGCACTGGAGGCCGCCAAACAGCGCCTGCATCCGCTGGCACTGCTGCAGGCCCTGGGTTCGGGCAAA
AATGCCATTCACACCGCCCTTGCTCAGGCCGGGCGCGCCCCGGCGGATGCGGAAATTCTCTTTGAACCCGTCACGCTGGA
ATGCGTTATCCGCCACGCGGAGCAACTGGCCAGCCGAACCCATCCGGTATACGGCAATTATTGGAGCCACCCTCGCTATC
AGGCGCGGGTCGTGGCGTTGGTGAACACCCCGGACCAGTCCGGTAACGACCAGTCCAGTACTGATGCAGTAAGCAGCAGG
ATGGCCGGCGGCGACACCCTGGTACTCACCCAGGGTTCGGCGCGGCTGACACTGGGTCTCAACGGCCCCGAATCAGCCCA
TAACAGCCCCAACACCCTGGTAGCAAATGCGCTGCCCTGGCTGCTGCCACTGGCGTTGCCCAATGCCGATTGGTCCCATA
TTCAACGGCGACTTACCCAGGTACAGGCAAGCCTCAATGCCATCAAGGATAACTCGGCAAAGGGCCAGGCGGCGCTGGCC
AAACTCATTGCCGATGCCGTCGATGAGATGACCCCGGGCTGCCGGGCGCTGGTGCTGGTTGGCGACACGGCCAAGGCCCT
GGCCGCCGAGGCCGCCGCCCTCTCCTGGCGGATAGCAGAAAGCCTGCGGGACGACATTGAACTGGTAACCCCGGCTGGCA
GCGTGTTTGCTCCGAGCCCTGCCACGGCCGATGGGCTCGCCTTCGTTTACCCCGGTGTGGGCGTGGCCTCAGCCTCCATG
CTCTCAAGCCTGCACCTGCGCTTTGCCGACAGTTTTGATGCCCTGGATCAGCAGAGCCGCGAGCACGGGCTCGACGGCCT
CAATGCCCTGCTGCAGCCAAGAGAGCTGGAAGACAACCCCAGTCTCGCCGAACAGGCCGTGGCCGGCGTGGGCGCCAGCT
ACCTGATGGCCCGTATCCTGACGACAGAGCTTGGCCTCAAACCTGCCATTGCCCTTGGGTATTCCATGGGCGAAGCCGCC
ATGGTGGCCAGCCATGGTCTGTGGCAAGACCCCTTTGCCATGGCGCACGATACCCTCGAGAGCGAACTCTTCAACGAGCA
GATCTCAGGTGAGCTCAAGGCCGTGCGGGCCCTGTGGCAGCTGGATGAGGAAACGCCCCAGGACAACCCGGCACCAAAGG
CGGCTAAATCCCGCGCCCGTAAAAAAGCCGCAGCCAGCAACGCGCTCAAGTGGCAAAGTGCCGTAGTAAGGCTCAGCGCC
GAGGAAATACGCCCCCATCTGGCAGACTTCCCCCGGGTCAGCATTGCCATCGCCCAGGGCCCCAGCACTGTGCTTGCCGG
AGACGAAACCGAGCTTAAGCACCTGTGCAAGACCCTTGGCAAACGGCCACTCACCACAGGGCTTGTTACTGCCATGCACA
CCCCGGCTGCTGCCGCCATCAAGGCGCAGCTCAAGGCATTTTATCTGCGACCACTGGCACAAGTGTCCGGCGACGCCAGG
GCAGCTTTGCCTGTGATGCTCAGCGCTGGCACCGATACGCCGCTGCAATTGGCAGACGAGTGTCAACCAGACGCGGTTGC
CCATGCCATCGCCACCACCTTCAGCGAGCCGCTGGACTTCACGGCTCTGGTGCTTCGTGCCGCCAAGGCCGGTGCCAGAC
TCTTTGTGGAGGTGGGCGCCGGACGGCAAACCAGCGGCATCATTCAGGCCATTGCCGACGCCCGCCTGATGCGCCTCAGC
GCCCATCCCTGCGACGGTCAGGATGGCAAGGCGCTGCAAAAAACCCTGGCACGCCTCATTGCCCACAGTATTCCGATGAA
TTTATCCCGCCTGCGCCCTGCCATTGCAGACGCGCCGCGCGCCGCCCAAGAGACAACGCCTTGA

Upstream 100 bases:

>100_bases
ATAATGCGCAGGGGCAGCTCGCCTCGGCGATGGAAGGGGTAAAGGTCACTATCAGCAAAAGCCTGAATCAGGCTTTTTTG
TCGGCCAAGGGCCAGGAGAT

Downstream 100 bases:

>100_bases
GCCAAGATACCCAAACACACTCTCACGCCCAGCCCGCTGATACCGGCACCATCGCCTGCCCCATCGCCATCGTCTCCATG
GCGGGGCGCTTTCCCGGTGC

Product: omega-3 polyunsaturated fatty acid synthase PfaB

Products: NA

Alternate protein names: PfaB Family Protein; Polyunsaturated Fatty Acid Synthase PfaB; Beta-Ketoacyl Synthase; Polyketide Synthase; Beta-Ketoacyl Synthase HglC; Glycolipid Synthase; LOW QUALITY PROTEIN Beta-Ketoacyl Synthase; Multi-Domain Beta-Ketoacyl Polyketide Synthase; Heterocyst Glycolipid Synthase

Number of amino acids: Translated: 687; Mature: 687

Protein sequence:

>687_residues
MMSVKTPPLRLALCRVQRCPNDAVRITASEPDWHALIEEAQKGSTIALGEDGTLLMLPALEAAKQRLHPLALLQALGSGK
NAIHTALAQAGRAPADAEILFEPVTLECVIRHAEQLASRTHPVYGNYWSHPRYQARVVALVNTPDQSGNDQSSTDAVSSR
MAGGDTLVLTQGSARLTLGLNGPESAHNSPNTLVANALPWLLPLALPNADWSHIQRRLTQVQASLNAIKDNSAKGQAALA
KLIADAVDEMTPGCRALVLVGDTAKALAAEAAALSWRIAESLRDDIELVTPAGSVFAPSPATADGLAFVYPGVGVASASM
LSSLHLRFADSFDALDQQSREHGLDGLNALLQPRELEDNPSLAEQAVAGVGASYLMARILTTELGLKPAIALGYSMGEAA
MVASHGLWQDPFAMAHDTLESELFNEQISGELKAVRALWQLDEETPQDNPAPKAAKSRARKKAAASNALKWQSAVVRLSA
EEIRPHLADFPRVSIAIAQGPSTVLAGDETELKHLCKTLGKRPLTTGLVTAMHTPAAAAIKAQLKAFYLRPLAQVSGDAR
AALPVMLSAGTDTPLQLADECQPDAVAHAIATTFSEPLDFTALVLRAAKAGARLFVEVGAGRQTSGIIQAIADARLMRLS
AHPCDGQDGKALQKTLARLIAHSIPMNLSRLRPAIADAPRAAQETTP

Sequences:

>Translated_687_residues
MMSVKTPPLRLALCRVQRCPNDAVRITASEPDWHALIEEAQKGSTIALGEDGTLLMLPALEAAKQRLHPLALLQALGSGK
NAIHTALAQAGRAPADAEILFEPVTLECVIRHAEQLASRTHPVYGNYWSHPRYQARVVALVNTPDQSGNDQSSTDAVSSR
MAGGDTLVLTQGSARLTLGLNGPESAHNSPNTLVANALPWLLPLALPNADWSHIQRRLTQVQASLNAIKDNSAKGQAALA
KLIADAVDEMTPGCRALVLVGDTAKALAAEAAALSWRIAESLRDDIELVTPAGSVFAPSPATADGLAFVYPGVGVASASM
LSSLHLRFADSFDALDQQSREHGLDGLNALLQPRELEDNPSLAEQAVAGVGASYLMARILTTELGLKPAIALGYSMGEAA
MVASHGLWQDPFAMAHDTLESELFNEQISGELKAVRALWQLDEETPQDNPAPKAAKSRARKKAAASNALKWQSAVVRLSA
EEIRPHLADFPRVSIAIAQGPSTVLAGDETELKHLCKTLGKRPLTTGLVTAMHTPAAAAIKAQLKAFYLRPLAQVSGDAR
AALPVMLSAGTDTPLQLADECQPDAVAHAIATTFSEPLDFTALVLRAAKAGARLFVEVGAGRQTSGIIQAIADARLMRLS
AHPCDGQDGKALQKTLARLIAHSIPMNLSRLRPAIADAPRAAQETTP
>Mature_687_residues
MMSVKTPPLRLALCRVQRCPNDAVRITASEPDWHALIEEAQKGSTIALGEDGTLLMLPALEAAKQRLHPLALLQALGSGK
NAIHTALAQAGRAPADAEILFEPVTLECVIRHAEQLASRTHPVYGNYWSHPRYQARVVALVNTPDQSGNDQSSTDAVSSR
MAGGDTLVLTQGSARLTLGLNGPESAHNSPNTLVANALPWLLPLALPNADWSHIQRRLTQVQASLNAIKDNSAKGQAALA
KLIADAVDEMTPGCRALVLVGDTAKALAAEAAALSWRIAESLRDDIELVTPAGSVFAPSPATADGLAFVYPGVGVASASM
LSSLHLRFADSFDALDQQSREHGLDGLNALLQPRELEDNPSLAEQAVAGVGASYLMARILTTELGLKPAIALGYSMGEAA
MVASHGLWQDPFAMAHDTLESELFNEQISGELKAVRALWQLDEETPQDNPAPKAAKSRARKKAAASNALKWQSAVVRLSA
EEIRPHLADFPRVSIAIAQGPSTVLAGDETELKHLCKTLGKRPLTTGLVTAMHTPAAAAIKAQLKAFYLRPLAQVSGDAR
AALPVMLSAGTDTPLQLADECQPDAVAHAIATTFSEPLDFTALVLRAAKAGARLFVEVGAGRQTSGIIQAIADARLMRLS
AHPCDGQDGKALQKTLARLIAHSIPMNLSRLRPAIADAPRAAQETTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72660; Mature: 72660

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSVKTPPLRLALCRVQRCPNDAVRITASEPDWHALIEEAQKGSTIALGEDGTLLMLPAL
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCEEEECCH
EAAKQRLHPLALLQALGSGKNAIHTALAQAGRAPADAEILFEPVTLECVIRHAEQLASRT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC
HPVYGNYWSHPRYQARVVALVNTPDQSGNDQSSTDAVSSRMAGGDTLVLTQGSARLTLGL
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEC
NGPESAHNSPNTLVANALPWLLPLALPNADWSHIQRRLTQVQASLNAIKDNSAKGQAALA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KLIADAVDEMTPGCRALVLVGDTAKALAAEAAALSWRIAESLRDDIELVTPAGSVFAPSP
HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
ATADGLAFVYPGVGVASASMLSSLHLRFADSFDALDQQSREHGLDGLNALLQPRELEDNP
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
SLAEQAVAGVGASYLMARILTTELGLKPAIALGYSMGEAAMVASHGLWQDPFAMAHDTLE
HHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH
SELFNEQISGELKAVRALWQLDEETPQDNPAPKAAKSRARKKAAASNALKWQSAVVRLSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIRPHLADFPRVSIAIAQGPSTVLAGDETELKHLCKTLGKRPLTTGLVTAMHTPAAAAI
HHHCHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
KAQLKAFYLRPLAQVSGDARAALPVMLSAGTDTPLQLADECQPDAVAHAIATTFSEPLDF
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHH
TALVLRAAKAGARLFVEVGAGRQTSGIIQAIADARLMRLSAHPCDGQDGKALQKTLARLI
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
AHSIPMNLSRLRPAIADAPRAAQETTP
HHHCCCCHHHHCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MMSVKTPPLRLALCRVQRCPNDAVRITASEPDWHALIEEAQKGSTIALGEDGTLLMLPAL
CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCEEEECCH
EAAKQRLHPLALLQALGSGKNAIHTALAQAGRAPADAEILFEPVTLECVIRHAEQLASRT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCC
HPVYGNYWSHPRYQARVVALVNTPDQSGNDQSSTDAVSSRMAGGDTLVLTQGSARLTLGL
CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEC
NGPESAHNSPNTLVANALPWLLPLALPNADWSHIQRRLTQVQASLNAIKDNSAKGQAALA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
KLIADAVDEMTPGCRALVLVGDTAKALAAEAAALSWRIAESLRDDIELVTPAGSVFAPSP
HHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
ATADGLAFVYPGVGVASASMLSSLHLRFADSFDALDQQSREHGLDGLNALLQPRELEDNP
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
SLAEQAVAGVGASYLMARILTTELGLKPAIALGYSMGEAAMVASHGLWQDPFAMAHDTLE
HHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHH
SELFNEQISGELKAVRALWQLDEETPQDNPAPKAAKSRARKKAAASNALKWQSAVVRLSA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIRPHLADFPRVSIAIAQGPSTVLAGDETELKHLCKTLGKRPLTTGLVTAMHTPAAAAI
HHHCHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
KAQLKAFYLRPLAQVSGDARAALPVMLSAGTDTPLQLADECQPDAVAHAIATTFSEPLDF
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHCCCCHH
TALVLRAAKAGARLFVEVGAGRQTSGIIQAIADARLMRLSAHPCDGQDGKALQKTLARLI
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
AHSIPMNLSRLRPAIADAPRAAQETTP
HHHCCCCHHHHCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA