Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774133

Identifier: 119774133

GI number: 119774133

Start: 1208635

End: 1209339

Strand: Direct

Name: 119774133

Synonym: Sama_0996

Alternate gene names: NA

Gene position: 1208635-1209339 (Clockwise)

Preceding gene: 119774122

Following gene: 119774136

Centisome position: 28.07

GC content: 55.18

Gene sequence:

>705_bases
GTGCCCCAGAGTGTTAGCGATTCCCCAAGGGGATCAGGCAACAAATGTCACAAGATATTCCGGCTCGCCAGGCAAATGTT
TGCCGTCGGTATGCTGTTGCTCTGTGCGTGTTTACTCGGAGGGGCGCTGGGTTTCACCTCGGCAGATAATCCAGAGTTGT
TCAGTCCTTTCAATCACAACCTTTCCGAGCTGGGTACCTATGGGCTGTCACCATTGGCAGTGCTTGCCAATGGCGGTGTG
TTCTTCGGTGGTTTACTGCTGAGTTTGGGCTGCCTGCAGGGCATGCGTACTCAACGTGGTGGTGGCATGCTGGTATGGCT
GTTGCTGGCGTTCACCTGGCTGTCTCTGGCCCTGACCGGACTCTTTCCATCGAACGTGTATCATCTGCACACCCTTGCCC
TGAAATGGTTTTTTACCCTGGGGCTGGCGGCATCCCTGTGTTATTGCCTCTATCTTGCGCTGCGTCAGGCACCGGTAACC
GGCTTTTGGTCTTTGGGTCTTTGTTTGCTGGCGCTGCTGGCAAACAGCGCTTTTTTGTTGTTGCCCAGTCTGACGCTGGA
GGGCCTGCCTTTCAGCAGGCCCTTCTATGAAGAAGTTTATTCCCCCTACCCAAGGCCAGCGTTTTGGTGGCCCGCCACAC
TGCAATGGTTAAGCCTGGTCACCATGCTGCTGTGGCAAGCCGAACTCTTCAGACGGCCTGATTAA

Upstream 100 bases:

>100_bases
GCCAGGTTAAAAAATGTCATACGGTTAGCTGTAAAGCCCGGTTTTTATCTGTATGGTAAACAAAGTGATTTTACTATTCT
GCCCAAGGATTGGAGACAAG

Downstream 100 bases:

>100_bases
ATCCCGCTTCACCAAACCAGTATCCATTACATTCATTCCCCGATAGCGGGGTGGAGATTTCCAGGTTTGGCAGCGACATG
CCACTTGGGGAAATCCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPQSVSDSPRGSGNKCHKIFRLARQMFAVGMLLLCACLLGGALGFTSADNPELFSPFNHNLSELGTYGLSPLAVLANGGV
FFGGLLLSLGCLQGMRTQRGGGMLVWLLLAFTWLSLALTGLFPSNVYHLHTLALKWFFTLGLAASLCYCLYLALRQAPVT
GFWSLGLCLLALLANSAFLLLPSLTLEGLPFSRPFYEEVYSPYPRPAFWWPATLQWLSLVTMLLWQAELFRRPD

Sequences:

>Translated_234_residues
MPQSVSDSPRGSGNKCHKIFRLARQMFAVGMLLLCACLLGGALGFTSADNPELFSPFNHNLSELGTYGLSPLAVLANGGV
FFGGLLLSLGCLQGMRTQRGGGMLVWLLLAFTWLSLALTGLFPSNVYHLHTLALKWFFTLGLAASLCYCLYLALRQAPVT
GFWSLGLCLLALLANSAFLLLPSLTLEGLPFSRPFYEEVYSPYPRPAFWWPATLQWLSLVTMLLWQAELFRRPD
>Mature_233_residues
PQSVSDSPRGSGNKCHKIFRLARQMFAVGMLLLCACLLGGALGFTSADNPELFSPFNHNLSELGTYGLSPLAVLANGGVF
FGGLLLSLGCLQGMRTQRGGGMLVWLLLAFTWLSLALTGLFPSNVYHLHTLALKWFFTLGLAASLCYCLYLALRQAPVTG
FWSLGLCLLALLANSAFLLLPSLTLEGLPFSRPFYEEVYSPYPRPAFWWPATLQWLSLVTMLLWQAELFRRPD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25788; Mature: 25657

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQSVSDSPRGSGNKCHKIFRLARQMFAVGMLLLCACLLGGALGFTSADNPELFSPFNHN
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LSELGTYGLSPLAVLANGGVFFGGLLLSLGCLQGMRTQRGGGMLVWLLLAFTWLSLALTG
HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LFPSNVYHLHTLALKWFFTLGLAASLCYCLYLALRQAPVTGFWSLGLCLLALLANSAFLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
LPSLTLEGLPFSRPFYEEVYSPYPRPAFWWPATLQWLSLVTMLLWQAELFRRPD
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PQSVSDSPRGSGNKCHKIFRLARQMFAVGMLLLCACLLGGALGFTSADNPELFSPFNHN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LSELGTYGLSPLAVLANGGVFFGGLLLSLGCLQGMRTQRGGGMLVWLLLAFTWLSLALTG
HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LFPSNVYHLHTLALKWFFTLGLAASLCYCLYLALRQAPVTGFWSLGLCLLALLANSAFLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
LPSLTLEGLPFSRPFYEEVYSPYPRPAFWWPATLQWLSLVTMLLWQAELFRRPD
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA