| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yceI [C]
Identifier: 119774087
GI number: 119774087
Start: 1150775
End: 1151347
Strand: Direct
Name: yceI [C]
Synonym: Sama_0950
Alternate gene names: 119774087
Gene position: 1150775-1151347 (Clockwise)
Preceding gene: 119774086
Following gene: 119774088
Centisome position: 26.72
GC content: 50.09
Gene sequence:
>573_bases ATGAAAAAGACTCTACTTTCTGCCCTGTTTGTTACGTCACTTATCGCTGTGCCAGTCTCGGCTGCAGACTATGTGATTGA TACTCAGGGAGCACACGCTTCCATCAACTTTAAAGTCAATCATCTGGGCTACAGCTTTGTGGTTGGCCGCTTTAACGACT TCGGTGGCGAGTTCAGCTTTGATGGCAAGTCACCTGAAACTGCCAAAGTAAAGGTGACAGTAAACACCCAGAGTCTGGAC TCCAATCATGCCGAGCGTGATAAGCATTTAAAGAGTGCCGACTTTATCAATGCGGGTAAGTATCCTGAGGCCGTGTTTGA GTCTACATCTGTGAAGGCGGGCAGCGACGGCACTTTGGTTATCGAAGGTAACTTTACCCTTAACGGCGTAACCAAGCCGT TAACCATAGATGCCGTTGCCATCGGTGAAGGCAGCGACCCCTGGGGTGGCTACCGCGCGGGCTTTACCGGCAGTACCAGC TTTGCCCTCAAGGATTACAACATCAACTATGATTTGGGGCCAGCCTCTACCCATGTGACCCTGGACCTGGTAGTTGAAGG CATTCGTAAATAA
Upstream 100 bases:
>100_bases CCCTGGTGAGTGCCCATGCGCTGGCTGCCATCAAACACCACCTTATTAACAGAAACGCCACTTTATTAAGAATGCTAAGG CCCCAAAAGGAAATCTGAAC
Downstream 100 bases:
>100_bases CGCGATATACACCTGTTAAGACGCCCCGAAAGGGGCGTTTTTCATGGGGAATTGTCGTGCATCGGCGACGGATTTCAGGG TACACTAGCGCCAATTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MKKTLLSALFVTSLIAVPVSAADYVIDTQGAHASINFKVNHLGYSFVVGRFNDFGGEFSFDGKSPETAKVKVTVNTQSLD SNHAERDKHLKSADFINAGKYPEAVFESTSVKAGSDGTLVIEGNFTLNGVTKPLTIDAVAIGEGSDPWGGYRAGFTGSTS FALKDYNINYDLGPASTHVTLDLVVEGIRK
Sequences:
>Translated_190_residues MKKTLLSALFVTSLIAVPVSAADYVIDTQGAHASINFKVNHLGYSFVVGRFNDFGGEFSFDGKSPETAKVKVTVNTQSLD SNHAERDKHLKSADFINAGKYPEAVFESTSVKAGSDGTLVIEGNFTLNGVTKPLTIDAVAIGEGSDPWGGYRAGFTGSTS FALKDYNINYDLGPASTHVTLDLVVEGIRK >Mature_190_residues MKKTLLSALFVTSLIAVPVSAADYVIDTQGAHASINFKVNHLGYSFVVGRFNDFGGEFSFDGKSPETAKVKVTVNTQSLD SNHAERDKHLKSADFINAGKYPEAVFESTSVKAGSDGTLVIEGNFTLNGVTKPLTIDAVAIGEGSDPWGGYRAGFTGSTS FALKDYNINYDLGPASTHVTLDLVVEGIRK
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=191, Percent_Identity=55.4973821989529, Blast_Score=216, Evalue=8e-58,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 20243; Mature: 20243
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLLSALFVTSLIAVPVSAADYVIDTQGAHASINFKVNHLGYSFVVGRFNDFGGEFSF CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCEEEE DGKSPETAKVKVTVNTQSLDSNHAERDKHLKSADFINAGKYPEAVFESTSVKAGSDGTLV CCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE IEGNFTLNGVTKPLTIDAVAIGEGSDPWGGYRAGFTGSTSFALKDYNINYDLGPASTHVT EECCEEECCCCCCEEEEEEEECCCCCCCCCEECCCCCCCEEEEEECCCEEECCCCCCEEE LDLVVEGIRK HEEEHHHHCC >Mature Secondary Structure MKKTLLSALFVTSLIAVPVSAADYVIDTQGAHASINFKVNHLGYSFVVGRFNDFGGEFSF CCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCEEEE DGKSPETAKVKVTVNTQSLDSNHAERDKHLKSADFINAGKYPEAVFESTSVKAGSDGTLV CCCCCCCEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEE IEGNFTLNGVTKPLTIDAVAIGEGSDPWGGYRAGFTGSTSFALKDYNINYDLGPASTHVT EECCEEECCCCCCEEEEEEEECCCCCCCCCEECCCCCCCEEEEEECCCEEECCCCCCEEE LDLVVEGIRK HEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA