| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is erpA
Identifier: 119773980
GI number: 119773980
Start: 1028356
End: 1028706
Strand: Direct
Name: erpA
Synonym: Sama_0843
Alternate gene names: 119773980
Gene position: 1028356-1028706 (Clockwise)
Preceding gene: 119773979
Following gene: 119773984
Centisome position: 23.88
GC content: 53.85
Gene sequence:
>351_bases ATGACTGAACAAACTGACGTAGCCATGCCCATCTCTTTCACCGATGCAGCGGCTGCCAAAGTTAAGGCTCTGCTCGATGA AGAGCAGAATGATGCACTCAAGCTGCGCGTCTATGTTACCGGCGGTGGCTGTTCTGGGTTCCAGTACGGTTTCACCTTCG ATGAAAAGGTGAACGACGGCGATTTCACCGTGGAAAAGCAGGGTGTTCAGCTGGTGGTCGACCCCATGAGTCTGCAATAC CTGATGGGCGGTGAAGTGGATTACACTTCAGGCTTGGAAGGCTCACGCTTCTTTGTGAAGAACCCCAACGCCACCACCAC CTGTGGCTGTGGCGCCAGCTTCTCTGTGTAA
Upstream 100 bases:
>100_bases CCGATGCTGACGGGAGAGACAAAAGAGCCCGGTATAATACTTGAACAAAATAGTCAGGTAACGGATAATTCCGGGCAGCA ATCTGAAGTTCGAGGTAGTA
Downstream 100 bases:
>100_bases GCTGTTTTGCCCATAAATAAAAAAGCCGCCCCAGGGCGGCTTTTTTATTTGGCTATTCGGTAGCTTAACCTTTCGCAGGC TGGTACCTCAGCTCATCAGG
Product: iron-sulfur cluster insertion protein ErpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MTEQTDVAMPISFTDAAAAKVKALLDEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNDGDFTVEKQGVQLVVDPMSLQY LMGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFSV
Sequences:
>Translated_116_residues MTEQTDVAMPISFTDAAAAKVKALLDEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNDGDFTVEKQGVQLVVDPMSLQY LMGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFSV >Mature_115_residues TEQTDVAMPISFTDAAAAKVKALLDEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNDGDFTVEKQGVQLVVDPMSLQYL MGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFSV
Specific function: Required for insertion of 4Fe-4S clusters for at least ispG
COG id: COG0316
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hesB/iscA family
Homologues:
Organism=Homo sapiens, GI160420328, Length=107, Percent_Identity=42.0560747663551, Blast_Score=78, Evalue=2e-15, Organism=Homo sapiens, GI52426768, Length=106, Percent_Identity=32.0754716981132, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1786351, Length=111, Percent_Identity=75.6756756756757, Blast_Score=182, Evalue=3e-48, Organism=Escherichia coli, GI1788877, Length=110, Percent_Identity=40.9090909090909, Blast_Score=72, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71998452, Length=118, Percent_Identity=38.9830508474576, Blast_Score=82, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193209025, Length=114, Percent_Identity=34.2105263157895, Blast_Score=82, Evalue=8e-17, Organism=Caenorhabditis elegans, GI25146411, Length=114, Percent_Identity=35.0877192982456, Blast_Score=79, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6323001, Length=106, Percent_Identity=35.8490566037736, Blast_Score=72, Evalue=2e-14, Organism=Drosophila melanogaster, GI24649697, Length=83, Percent_Identity=46.9879518072289, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI24642263, Length=106, Percent_Identity=33.9622641509434, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): ERPA_SHEAM (A1S3U4)
Other databases:
- EMBL: CP000507 - RefSeq: YP_926720.1 - ProteinModelPortal: A1S3U4 - SMR: A1S3U4 - STRING: A1S3U4 - GeneID: 4603095 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_0843 - NMPDR: fig|326297.7.peg.794 - eggNOG: COG0316 - HOGENOM: HBG730174 - OMA: TFDDQIN - PhylomeDB: A1S3U4 - ProtClustDB: PRK13623 - HAMAP: MF_01380 - InterPro: IPR000361 - InterPro: IPR016092 - InterPro: IPR017870 - InterPro: IPR023063 - Gene3D: G3DSA:2.60.300.12 - PANTHER: PTHR10072 - TIGRFAMs: TIGR00049
Pfam domain/function: PF01521 Fe-S_biosyn; SSF89360 HesB_yadR_yfhF-like
EC number: NA
Molecular weight: Translated: 12430; Mature: 12299
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: PS01152 HESB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQTDVAMPISFTDAAAAKVKALLDEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNDG CCCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCC DFTVEKQGVQLVVDPMSLQYLMGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFSV CEEEECCCCEEEECCCEEEEEECCCEEECCCCCCCEEEEECCCCCEEECCCCCCCC >Mature Secondary Structure TEQTDVAMPISFTDAAAAKVKALLDEEQNDALKLRVYVTGGGCSGFQYGFTFDEKVNDG CCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCC DFTVEKQGVQLVVDPMSLQYLMGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFSV CEEEECCCCEEEECCCEEEEEECCCEEECCCCCCCEEEEECCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA