Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is yqiK [H]

Identifier: 119773941

GI number: 119773941

Start: 987597

End: 989354

Strand: Direct

Name: yqiK [H]

Synonym: Sama_0804

Alternate gene names: 119773941

Gene position: 987597-989354 (Clockwise)

Preceding gene: 119773940

Following gene: 119773946

Centisome position: 22.93

GC content: 54.66

Gene sequence:

>1758_bases
ATGGACAACTCACAGATTTTTACCGACAGCGGCACCTTTATGCTGATGATAGCCGGCGTGGCGGTATTGGGACTTTTGGT
AATTGGGCTTATCTTCGCCAAGCTCTATCGCCGTGCCACCAAAGAAACCGCTTTCGTGCGGACCGGTTTTGGCGGTGAAA
AGGTGGTAAAGGATGGCGGCGCCATTGTGCTGCCGGTACTGCATGAAACCATTCATGTGAATATGAATACCCTGCGTATT
GAGGTGGAAAAGACTCAGAAAGATGCGCTTATCACCAAAGACCGCATGCGGGTGGATGTGAAAGCCGACTTCTACCTGCG
GGTTGCGCCCCACGCCGAGGGTATCTCCATGGCGGCGCAGACGTTGGGTACCCGTACCACCCGGGTGGAAGAGCTGAAAA
AGCTGATGGAATCCAAGTTTGTTGACGTGCTGCGTGCCGTGGCCGCCGAAATGACCATGACCGAAATGCACGAGCAGCGC
GCCGATTTTGTGCAGCGTGTGCAAAACAATGTGGCCAACGACCTTGAGAAAAACGGTTTGGAGCTGGAGTCTGTGTCTCT
GACCGGCTTTGACCAGACTGAGCTTGATTTTTTCAATGAAAATAACGCGTTCGATGCTGAAGGTCGTGCTCGTCTCGCCA
AAATCATTGAAGAAAAGCGCAAGGAAACCAACGATATTCAGCAGGAAAACCGTATCAAGATCGAGATGCGTAACCTCGAG
GCGGAAAAAGAGTCGCTGGAAATCAAGAAGTCGGAAGAAGAAGCCAAGCTGGTGCAGCAGCAGGCGCTGGAATTTAAGCG
CGCCGAGCAGAAGGCGGAAATCATCAAACAGCGGGAGCAAAAGGCCCGAGAAGAACGTGAAGCGGAAATCGCCAAAGAGC
GTGCGGTAGAAGCGGCCGAGATTGAAAAGACCCGGGAAATCGAAACCCGCGAAATTGAAAAGCGCAAAACCATTGAGCAG
GCCCGTATTCAACAGCAGCGCGACATTGAAGTTTCCGAGCAGGAAAAACAAATCGCAGTAGCCGCCAAATCGGAAGAAGA
GTCCGCCGCCCGTGCCCGCGCCGCCGAAGCTGAAAAGCTGAAAGTGGAAAAAGAAGAAGCGGTTATCACAGTGCGTCAGG
TGGCCGAAGCCAATCGTCGTAAAGAGATTGAAGTGATTGACGCCCGCAAAGAAGCTGAGCGTGAGGCCGTGGGCGTGACA
GTGCAGGCCGAAGCAGAAAAGCGTGCAGCAGAAGACCGGTCGTCAGCCATTCTCACTGAAGCCCGCGCTGCCGCCGATGC
CAAGAAGCTTAAGGCCGAGGCCGATGAGAAGGTGTACGCGGTGGAAGCGGCCGGTAAGCAGGCGCTGTACGAGGCCGAAA
ACGTGCTCCGTGACGAACAGATCGAGCTGCAAAAATCCCTCGCCATCCTGCGTGCCCTGCCGGAAATTGTGGCCAATGCG
GTTAAACCTCTGGAAAACATTGAAGGCATCAAGATTTTGCAGGGCTATGGTGCAAATGGTGCCACACTGGCGACCGGCGA
AGGCGCCGCCAATGGCGGCATTGCCGAGCAAGTGACTCAGGCAGCACTCAACTACCGCGCCAACGCGCCGGTGGTGGATG
CCATGCTCCGTGAACTCGGGCTGGTGGACAAAGATAAAGGCGGCCTGAATGATTTGCTCACTGGCAACAATGCCCTTACT
ACCCAGGCTATGCAGGTGGTGGAGCAGGCGAATGTGAAACTGAATGGTTATAGCCTTGGGGAGCAGAAGGCCGACTGA

Upstream 100 bases:

>100_bases
TCATTCAGGGCACTCAGGTAGTGCTTATTCGCAGGGTGGGCCGGGTATGGTCCGCCAGTCAATTTACTCAATAAACTGTT
GTAGATAACAAGGAAGCTAG

Downstream 100 bases:

>100_bases
CAGGCTTGCTGAACTCCTGATAAAAAAGCGCCTGCGGGCGCTTTTTTATTAGAGACGTTTTCAGAAAACCCGGAAGCGAT
GCTGGGCATGCACTTACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MDNSQIFTDSGTFMLMIAGVAVLGLLVIGLIFAKLYRRATKETAFVRTGFGGEKVVKDGGAIVLPVLHETIHVNMNTLRI
EVEKTQKDALITKDRMRVDVKADFYLRVAPHAEGISMAAQTLGTRTTRVEELKKLMESKFVDVLRAVAAEMTMTEMHEQR
ADFVQRVQNNVANDLEKNGLELESVSLTGFDQTELDFFNENNAFDAEGRARLAKIIEEKRKETNDIQQENRIKIEMRNLE
AEKESLEIKKSEEEAKLVQQQALEFKRAEQKAEIIKQREQKAREEREAEIAKERAVEAAEIEKTREIETREIEKRKTIEQ
ARIQQQRDIEVSEQEKQIAVAAKSEEESAARARAAEAEKLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAEREAVGVT
VQAEAEKRAAEDRSSAILTEARAAADAKKLKAEADEKVYAVEAAGKQALYEAENVLRDEQIELQKSLAILRALPEIVANA
VKPLENIEGIKILQGYGANGATLATGEGAANGGIAEQVTQAALNYRANAPVVDAMLRELGLVDKDKGGLNDLLTGNNALT
TQAMQVVEQANVKLNGYSLGEQKAD

Sequences:

>Translated_585_residues
MDNSQIFTDSGTFMLMIAGVAVLGLLVIGLIFAKLYRRATKETAFVRTGFGGEKVVKDGGAIVLPVLHETIHVNMNTLRI
EVEKTQKDALITKDRMRVDVKADFYLRVAPHAEGISMAAQTLGTRTTRVEELKKLMESKFVDVLRAVAAEMTMTEMHEQR
ADFVQRVQNNVANDLEKNGLELESVSLTGFDQTELDFFNENNAFDAEGRARLAKIIEEKRKETNDIQQENRIKIEMRNLE
AEKESLEIKKSEEEAKLVQQQALEFKRAEQKAEIIKQREQKAREEREAEIAKERAVEAAEIEKTREIETREIEKRKTIEQ
ARIQQQRDIEVSEQEKQIAVAAKSEEESAARARAAEAEKLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAEREAVGVT
VQAEAEKRAAEDRSSAILTEARAAADAKKLKAEADEKVYAVEAAGKQALYEAENVLRDEQIELQKSLAILRALPEIVANA
VKPLENIEGIKILQGYGANGATLATGEGAANGGIAEQVTQAALNYRANAPVVDAMLRELGLVDKDKGGLNDLLTGNNALT
TQAMQVVEQANVKLNGYSLGEQKAD
>Mature_585_residues
MDNSQIFTDSGTFMLMIAGVAVLGLLVIGLIFAKLYRRATKETAFVRTGFGGEKVVKDGGAIVLPVLHETIHVNMNTLRI
EVEKTQKDALITKDRMRVDVKADFYLRVAPHAEGISMAAQTLGTRTTRVEELKKLMESKFVDVLRAVAAEMTMTEMHEQR
ADFVQRVQNNVANDLEKNGLELESVSLTGFDQTELDFFNENNAFDAEGRARLAKIIEEKRKETNDIQQENRIKIEMRNLE
AEKESLEIKKSEEEAKLVQQQALEFKRAEQKAEIIKQREQKAREEREAEIAKERAVEAAEIEKTREIETREIEKRKTIEQ
ARIQQQRDIEVSEQEKQIAVAAKSEEESAARARAAEAEKLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAEREAVGVT
VQAEAEKRAAEDRSSAILTEARAAADAKKLKAEADEKVYAVEAAGKQALYEAENVLRDEQIELQKSLAILRALPEIVANA
VKPLENIEGIKILQGYGANGATLATGEGAANGGIAEQVTQAALNYRANAPVVDAMLRELGLVDKDKGGLNDLLTGNNALT
TQAMQVVEQANVKLNGYSLGEQKAD

Specific function: Unknown

COG id: COG2268

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yuaG and Synechocystis PCC 6803 sll1021 [H]

Homologues:

Organism=Escherichia coli, GI1789430, Length=562, Percent_Identity=45.1957295373665, Blast_Score=429, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 65034; Mature: 65034

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSQIFTDSGTFMLMIAGVAVLGLLVIGLIFAKLYRRATKETAFVRTGFGGEKVVKDGG
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCC
AIVLPVLHETIHVNMNTLRIEVEKTQKDALITKDRMRVDVKADFYLRVAPHAEGISMAAQ
EEEEEEHHHHHEEEEEEEEEEEECCCCCHHEECCCEEEEEEEEEEEEECCCCCHHHHHHH
TLGTRTTRVEELKKLMESKFVDVLRAVAAEMTMTEMHEQRADFVQRVQNNVANDLEKNGL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ELESVSLTGFDQTELDFFNENNAFDAEGRARLAKIIEEKRKETNDIQQENRIKIEMRNLE
EEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
AEKESLEIKKSEEEAKLVQQQALEFKRAEQKAEIIKQREQKAREEREAEIAKERAVEAAE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKTREIETREIEKRKTIEQARIQQQRDIEVSEQEKQIAVAAKSEEESAARARAAEAEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
KVEKEEAVITVRQVAEANRRKEIEVIDARKEAEREAVGVTVQAEAEKRAAEDRSSAILTE
HCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCEEEEECHHHHHHHHHHHHHHHH
ARAAADAKKLKAEADEKVYAVEAAGKQALYEAENVLRDEQIELQKSLAILRALPEIVANA
HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKPLENIEGIKILQGYGANGATLATGEGAANGGIAEQVTQAALNYRANAPVVDAMLRELG
HHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
LVDKDKGGLNDLLTGNNALTTQAMQVVEQANVKLNGYSLGEQKAD
CCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEECEECCCCCCC
>Mature Secondary Structure
MDNSQIFTDSGTFMLMIAGVAVLGLLVIGLIFAKLYRRATKETAFVRTGFGGEKVVKDGG
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHCCC
AIVLPVLHETIHVNMNTLRIEVEKTQKDALITKDRMRVDVKADFYLRVAPHAEGISMAAQ
EEEEEEHHHHHEEEEEEEEEEEECCCCCHHEECCCEEEEEEEEEEEEECCCCCHHHHHHH
TLGTRTTRVEELKKLMESKFVDVLRAVAAEMTMTEMHEQRADFVQRVQNNVANDLEKNGL
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ELESVSLTGFDQTELDFFNENNAFDAEGRARLAKIIEEKRKETNDIQQENRIKIEMRNLE
EEEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
AEKESLEIKKSEEEAKLVQQQALEFKRAEQKAEIIKQREQKAREEREAEIAKERAVEAAE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKTREIETREIEKRKTIEQARIQQQRDIEVSEQEKQIAVAAKSEEESAARARAAEAEKL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
KVEKEEAVITVRQVAEANRRKEIEVIDARKEAEREAVGVTVQAEAEKRAAEDRSSAILTE
HCCHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCEEEEECHHHHHHHHHHHHHHHH
ARAAADAKKLKAEADEKVYAVEAAGKQALYEAENVLRDEQIELQKSLAILRALPEIVANA
HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKPLENIEGIKILQGYGANGATLATGEGAANGGIAEQVTQAALNYRANAPVVDAMLRELG
HHHHHCCCCEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
LVDKDKGGLNDLLTGNNALTTQAMQVVEQANVKLNGYSLGEQKAD
CCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCEEECEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]