Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 119773933

GI number: 119773933

Start: 981287

End: 982396

Strand: Direct

Name: lptF [H]

Synonym: Sama_0796

Alternate gene names: 119773933

Gene position: 981287-982396 (Clockwise)

Preceding gene: 119773931

Following gene: 119773934

Centisome position: 22.79

GC content: 54.86

Gene sequence:

>1110_bases
GTGATTGTATTTAGATATCTTTTCAAAGAAGTTTTCAAGGCACAAATCGCGGTACTTTTGGTGCTGTTGACTGTTTTTAT
CAGCCAGCATTTTGTCCGTGTACTTGCCGACGCGTCGGACGGTGAGTTTCCCGCCTCTTTAGTCGTTACCCTGCTTGGGT
TGAATCTCCCCTATCTGGCTGTGCTTGTGCTGCCCCTGAGCTTGTTTCTTGGCATTTTGATGGCCCATGGGCGTATGTAC
GCCGAAAACGAGATGGTAGTGTTCCACGGGGTCGGGGTCAGTGAATGGTATGTCACCAGGGTCACCCTCTTGCTCGCTGT
GCTTAATATGCTGTTTACCGGCTACTTGTCTCTGTTTGTGACCCCTTGGGCGGAAGAGCGCCAAAATCAGGTACTGGAAA
AGGCCCAGTCTGAGGCCGGTCTGGCAGCTCTGGTGCAGGGCCGTTTTCAAACCAGCCCCGATGGCCGCGCCGTACTCTTT
GTGGAAAAAATTGGCAAAGACAACGAGCTGGAAAAAGTGTTTGTGGCCCAGTTGCCTGACCCCGACGACGAACATGGCCA
GATAAATCTGGTATCTGCCGCCGGAGGCAAGGTGGTGGAAGATGCCAGTGGCGCTCAGCAGCTTAAGTTGAACGACGGCG
TGCGCTACCAGGGTTCGCCCAAGAGCCTGGATTATCAGGTGCTTGAATTTGGCGGCTATGGCATGCAAATCAAGGAGCAG
GAGGTCGACGAGCGCAGACGCAAGATGTCGGCATTGCCGCTTAACCAGTTGCTGGATCAGAATACCCCCGAAGCAGTGGC
GGAACTCCACTGGCGTATCGCTATCCCCCTTGCCATCCCTTTGATGACCCTGATTGCTGTGCCCATGGCAAGGGTCAATG
TGCGTCAGGGCAAGTTTGCCAAGATGCTGCCGGCAATCCTCTTGTATCTCGGTTACTTCGGCCTGATGGTAGCCGGGCGC
AAGGCGCTGGAAGATGAAGTGGTTCCTGCGTTTATGGGTATGTGGTGGATACACCTGTCGGCCCTCGTCATGGGCATAAT
GCTGCTGGGTAAAGAGCGGCCGCTGGGGGCGAAACTCAGTGGCAGGTTCAAGCGGAGGGCCGCAGCATGA

Upstream 100 bases:

>100_bases
TTGTGATGGTGTTGGTCAGAAAACTATCAAAAGTAGACAGTTTACATGAATGTTAGGCTGATACCAGCAAAATGATAAGT
TTTGATACCGGATCCTGCCT

Downstream 100 bases:

>100_bases
GTATCCTGGACTGGTATATTGCCCGGGTGCTTATCAGTACCTCGTCCCTGTGTTTGCTGGTGCTGACCGGTTTGTCCGGC
ATTATCAAATGGGTGGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAVLVLPLSLFLGILMAHGRMY
AENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVTPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLF
VEKIGKDNELEKVFVAQLPDPDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFAKMLPAILLYLGYFGLMVAGR
KALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLSGRFKRRAAA

Sequences:

>Translated_369_residues
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAVLVLPLSLFLGILMAHGRMY
AENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVTPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLF
VEKIGKDNELEKVFVAQLPDPDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFAKMLPAILLYLGYFGLMVAGR
KALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLSGRFKRRAAA
>Mature_369_residues
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAVLVLPLSLFLGILMAHGRMY
AENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVTPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLF
VEKIGKDNELEKVFVAQLPDPDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFAKMLPAILLYLGYFGLMVAGR
KALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLSGRFKRRAAA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=369, Percent_Identity=35.230352303523, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40923; Mature: 40923

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHH
VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPD
CCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHEEECCC
PDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
CCCCCCEEEEEECCCCCEEECCCCCCEEEECCCCEECCCCCCCCCEEEEECCCCCEECHH
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFA
HHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GRFKRRAAA
HHHHHHCCC
>Mature Secondary Structure
MIVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHH
VLVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFV
HHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPD
CCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHEEECCC
PDDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGYGMQIKEQ
CCCCCCEEEEEECCCCCEEECCCCCCEEEECCCCEECCCCCCCCCEEEEECCCCCEECHH
EVDERRRKMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQGKFA
HHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLGKERPLGAKLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
GRFKRRAAA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]