| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773873
Identifier: 119773873
GI number: 119773873
Start: 903011
End: 903628
Strand: Direct
Name: 119773873
Synonym: Sama_0735
Alternate gene names: NA
Gene position: 903011-903628 (Clockwise)
Preceding gene: 119773871
Following gene: 119773874
Centisome position: 20.97
GC content: 52.75
Gene sequence:
>618_bases ATGGATATTGAAAGTCAGAGCCCAGTGGCTGTTGCACCGGGCGTTCAGACCCACGCCGAAACCTCACGACACTCACTGCG ACTGGACAATCAGGAGCTGGTGAAAACCAGTTTTTGGATAAGTCAGGTCTTTATGATTATCGCCACAGTGGCGGGTGTAT ATCTCGCTGCGAAAGAAGGTTTATCCCAGGCCATCGCTTTTGATTCGCTGATGAGCCAGCAAAATAACTATCACCTGCGC CACGCCCTCTATGATGAGCTGGCCGACAACGTGCAAATTCTGACGGCATATGCGGATAAGATAGAAAAAGAACGCCCCTT CGATATCAAACGGCACCACCCTGCAGTGGCTACCTTTGTGTGGGAAAACATGCGCTTTTCTCAAAGCACGCTGGAAACCC CGTCGGAAATTCTCTCTGCCTCCCGGCGCTTCCATAGCCAGTCGGCCGATATTATCGACAAGCTGGAGGCCAAGTTCTAT GGGCCGACCTACGGCGTAAAAGAGCTGCGTCTGGTGATAGCGTCCATGGAACAGCAAACCTTACCGGCACTGAAACGTGA TTATGAGGCGCTCGGTGAATCGCTGCGCCGGGCTGGGGTATTGGAGGACTCGAAATGA
Upstream 100 bases:
>100_bases TTGGCACTGGTCTACACTCGCCGCGGCGCGTATCCTTGGATTCTTTGCACCCCTCTTCATTAAATCGTTAATGAAATCCA AGGATTAGGAGTACCTTGAT
Downstream 100 bases:
>100_bases AAAAGCAATTAACCTGTCCCGGCTGCCAGCATCAGAGTTTCAGGGTGTTTGATTTTCACGGTGAGCAGGTGGATACCTGC GACAAGTGTGCCGGTCTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK
Sequences:
>Translated_205_residues MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK >Mature_205_residues MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23140; Mature: 23140
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEG CCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQAIAFDSLMSQQNNYHLRHALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFV HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH WENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFYGPTYGVKELRLVIASMEQQT HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LPALKRDYEALGESLRRAGVLEDSK HHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEG CCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSQAIAFDSLMSQQNNYHLRHALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFV HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH WENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFYGPTYGVKELRLVIASMEQQT HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LPALKRDYEALGESLRRAGVLEDSK HHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA