Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773873

Identifier: 119773873

GI number: 119773873

Start: 903011

End: 903628

Strand: Direct

Name: 119773873

Synonym: Sama_0735

Alternate gene names: NA

Gene position: 903011-903628 (Clockwise)

Preceding gene: 119773871

Following gene: 119773874

Centisome position: 20.97

GC content: 52.75

Gene sequence:

>618_bases
ATGGATATTGAAAGTCAGAGCCCAGTGGCTGTTGCACCGGGCGTTCAGACCCACGCCGAAACCTCACGACACTCACTGCG
ACTGGACAATCAGGAGCTGGTGAAAACCAGTTTTTGGATAAGTCAGGTCTTTATGATTATCGCCACAGTGGCGGGTGTAT
ATCTCGCTGCGAAAGAAGGTTTATCCCAGGCCATCGCTTTTGATTCGCTGATGAGCCAGCAAAATAACTATCACCTGCGC
CACGCCCTCTATGATGAGCTGGCCGACAACGTGCAAATTCTGACGGCATATGCGGATAAGATAGAAAAAGAACGCCCCTT
CGATATCAAACGGCACCACCCTGCAGTGGCTACCTTTGTGTGGGAAAACATGCGCTTTTCTCAAAGCACGCTGGAAACCC
CGTCGGAAATTCTCTCTGCCTCCCGGCGCTTCCATAGCCAGTCGGCCGATATTATCGACAAGCTGGAGGCCAAGTTCTAT
GGGCCGACCTACGGCGTAAAAGAGCTGCGTCTGGTGATAGCGTCCATGGAACAGCAAACCTTACCGGCACTGAAACGTGA
TTATGAGGCGCTCGGTGAATCGCTGCGCCGGGCTGGGGTATTGGAGGACTCGAAATGA

Upstream 100 bases:

>100_bases
TTGGCACTGGTCTACACTCGCCGCGGCGCGTATCCTTGGATTCTTTGCACCCCTCTTCATTAAATCGTTAATGAAATCCA
AGGATTAGGAGTACCTTGAT

Downstream 100 bases:

>100_bases
AAAAGCAATTAACCTGTCCCGGCTGCCAGCATCAGAGTTTCAGGGTGTTTGATTTTCACGGTGAGCAGGTGGATACCTGC
GACAAGTGTGCCGGTCTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR
HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY
GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK

Sequences:

>Translated_205_residues
MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR
HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY
GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK
>Mature_205_residues
MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEGLSQAIAFDSLMSQQNNYHLR
HALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFVWENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFY
GPTYGVKELRLVIASMEQQTLPALKRDYEALGESLRRAGVLEDSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23140; Mature: 23140

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEG
CCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQAIAFDSLMSQQNNYHLRHALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH
WENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFYGPTYGVKELRLVIASMEQQT
HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LPALKRDYEALGESLRRAGVLEDSK
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDIESQSPVAVAPGVQTHAETSRHSLRLDNQELVKTSFWISQVFMIIATVAGVYLAAKEG
CCCCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQAIAFDSLMSQQNNYHLRHALYDELADNVQILTAYADKIEKERPFDIKRHHPAVATFV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHCCCHHHHHH
WENMRFSQSTLETPSEILSASRRFHSQSADIIDKLEAKFYGPTYGVKELRLVIASMEQQT
HHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LPALKRDYEALGESLRRAGVLEDSK
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA