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The map label for this gene is ydcP [H]

Identifier: 119773815

GI number: 119773815

Start: 835288

End: 837207

Strand: Direct

Name: ydcP [H]

Synonym: Sama_0677

Alternate gene names: 119773815

Gene position: 835288-837207 (Clockwise)

Preceding gene: 119773814

Following gene: 119773816

Centisome position: 19.4

GC content: 54.37

Gene sequence:

>1920_bases
ATGAGTACAGAAGGCGTTGAGATTTTTATTCCCGGCAAACCCCAGGCCCTGGTGACCCCAGAGCCGGTTAAGCTTGCCGA
TAATAAGCTGGAGTTGCTGGCTCCCGCCAAAAACGCCGATTACGGAATCGAAGCCATTCGTCATGGCGCCGATGCAGTTT
ACATAGGTGCCCCCGCCTTTGGCGCTCGCCACACCGCCGGTAACAGCATTGCCGACATTGCCCGTCTGTGTGAATTTGCC
CACCGTTACCATGCCCAGGTGTTTGTTACCGTTAACACCATCTTGTTTGACTCAGAGCTGGAAGACGCCCGCAAACTGAT
TTGGGAAGTGTACGAGGCCGGTGCCGATGCCATTATCGTGCAGGATATTGGTCTGCTGGAACTTGATCTGCCGCCGATAG
CGCTGCACGCCAGTACCCAGATGGATAACCGGGTGCCGGAAAAGGTGGCTTTTTTGGAGCACGTCGGTTTTTCTCAGGCG
GTGCTGGCACGTGAGCTGAGCCTGACTCAAATTCGCGCCGTGGCGGCTGAAACCAAGATGCGACTTGAGTTTTTTATCCA
TGGCGCCCTGTGTGTGGCGTTCAGCGGCCAGTGCTATATCAGTGAAGCCTATACAGATAACCGCAGTGCCAATCGGGGTG
AGTGCTCACAACAGTGTCGTATGCCGGGGAACCTCAGTACCCGCAAGGGTGAGGTGATTGCCACCAACGAGCACATGTTG
TCGCTCAAAGACAACAACCAGACGGAAAACCTCGAAGCCCTGATTGATGCCGGTATTCGCTCTTTCAAGATTGAGGGGCG
TCTGAAGGACTTGAGTTACGTAAAAAACGTGACTGCCCACTATCGTCAGCAGCTCGATGCCATCATGGCCCGCCGCCCCG
AGTTTGAGCCTTCGTCCCATGGCCGCTGTAGCTACAGCTTTGTGCCTGATCCGGACAAGAGCTTCAACCGCGGCAAGACA
GATTATTTCGTGCATGACCGTAAGCCGGGCATTGCCGACTTCCGTACCCCAAAATACCTCGGGATTGATGTGGGTAAGGT
CAGCAAAATCGCCAAAGACCACATAGTGGTAGACTCCAATGCCGAATTCAATAACGGTGATGGTCTGGGCTTTTTTGCCA
AAAACTATGAAAAAGCCCGTTTGTCAGATGACAAACTCACCGGATTCAGGGTGAACCGCGCCGAAGGCAATGTGCTCTAT
CTCAAGACAGTGCCGGAAGATCTGCGGGTAGGTGTCACCCTATACCGTAACCACGATCAGGCGTTTGAGATGCTGCTGGC
TAAAGAGTCGGCCGAGCGTTTGGTGACGGTAAACTTTGCCCTGGCCGAGCGGGAGCAGGGGCTGGCATTGACCGCCTTTG
ATAACCATGGCCATTCAGTGACAGTGACCGCTGACTTTGATAAGCAGCAGGCCAAGGATATTGACCGCAACTGTGAAGGG
CTGAAAAAGAATCTGGGCAAGTTAGGAAACACTGACTTTTGCCTTGGTGAGATTGAACTGGGTGATGCTGCTGCCGTGTT
TGCGCCTGCGTCTGTCATTAATAATCTGCGCCGCGATGCGGTGGAGGCGCTTGGTCAGGCCCGTATTCAGGGCTACCAGC
GCCCAACGCCCTGGGAGCGTGATGACAGCGTGCGCTATCCCCAGCGCAGCATGACTTACCTCAGTAACGTCGCCAACCAG
AAGGCCAAAGACTTCTACACCCGCCACGGTGTGGTTTCAATCCGTGATGCCTATGAGGTGCGTCCGGTAAAAGGTGATGC
GCCCCTGATGATCACCAAACACTGCATCCGCTACAGCTACAACATGTGTCCCAAGGAAGTGCCGGGCATCAAGGCAGACC
CGCTGCAGATGGAACTGGGTGGCAAGGAATTCAAGCTGGTGTTTGACTGCCACAAGTGTGAAATGCTGGTAGTAGGCTAA

Upstream 100 bases:

>100_bases
CGCCAGCGCATAAGTCTTTCCTGAAAGACTGGCTCTGCTATACTCTGCGTCCGATTTTTCTACCGGGCCATTCAGTCAGG
CCAGCAGACGAGTTTGATTC

Downstream 100 bases:

>100_bases
GCCCCAGTACCATCAAAAACGGCGACCCAGGGTCGCCGTTTCTATTTCGCCGCTTTTCTCTGTGCACTTTTTATTTAAGG
CAATTGGCCGATGCGATAGT

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MSTEGVEIFIPGKPQALVTPEPVKLADNKLELLAPAKNADYGIEAIRHGADAVYIGAPAFGARHTAGNSIADIARLCEFA
HRYHAQVFVTVNTILFDSELEDARKLIWEVYEAGADAIIVQDIGLLELDLPPIALHASTQMDNRVPEKVAFLEHVGFSQA
VLARELSLTQIRAVAAETKMRLEFFIHGALCVAFSGQCYISEAYTDNRSANRGECSQQCRMPGNLSTRKGEVIATNEHML
SLKDNNQTENLEALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQQLDAIMARRPEFEPSSHGRCSYSFVPDPDKSFNRGKT
DYFVHDRKPGIADFRTPKYLGIDVGKVSKIAKDHIVVDSNAEFNNGDGLGFFAKNYEKARLSDDKLTGFRVNRAEGNVLY
LKTVPEDLRVGVTLYRNHDQAFEMLLAKESAERLVTVNFALAEREQGLALTAFDNHGHSVTVTADFDKQQAKDIDRNCEG
LKKNLGKLGNTDFCLGEIELGDAAAVFAPASVINNLRRDAVEALGQARIQGYQRPTPWERDDSVRYPQRSMTYLSNVANQ
KAKDFYTRHGVVSIRDAYEVRPVKGDAPLMITKHCIRYSYNMCPKEVPGIKADPLQMELGGKEFKLVFDCHKCEMLVVG

Sequences:

>Translated_639_residues
MSTEGVEIFIPGKPQALVTPEPVKLADNKLELLAPAKNADYGIEAIRHGADAVYIGAPAFGARHTAGNSIADIARLCEFA
HRYHAQVFVTVNTILFDSELEDARKLIWEVYEAGADAIIVQDIGLLELDLPPIALHASTQMDNRVPEKVAFLEHVGFSQA
VLARELSLTQIRAVAAETKMRLEFFIHGALCVAFSGQCYISEAYTDNRSANRGECSQQCRMPGNLSTRKGEVIATNEHML
SLKDNNQTENLEALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQQLDAIMARRPEFEPSSHGRCSYSFVPDPDKSFNRGKT
DYFVHDRKPGIADFRTPKYLGIDVGKVSKIAKDHIVVDSNAEFNNGDGLGFFAKNYEKARLSDDKLTGFRVNRAEGNVLY
LKTVPEDLRVGVTLYRNHDQAFEMLLAKESAERLVTVNFALAEREQGLALTAFDNHGHSVTVTADFDKQQAKDIDRNCEG
LKKNLGKLGNTDFCLGEIELGDAAAVFAPASVINNLRRDAVEALGQARIQGYQRPTPWERDDSVRYPQRSMTYLSNVANQ
KAKDFYTRHGVVSIRDAYEVRPVKGDAPLMITKHCIRYSYNMCPKEVPGIKADPLQMELGGKEFKLVFDCHKCEMLVVG
>Mature_638_residues
STEGVEIFIPGKPQALVTPEPVKLADNKLELLAPAKNADYGIEAIRHGADAVYIGAPAFGARHTAGNSIADIARLCEFAH
RYHAQVFVTVNTILFDSELEDARKLIWEVYEAGADAIIVQDIGLLELDLPPIALHASTQMDNRVPEKVAFLEHVGFSQAV
LARELSLTQIRAVAAETKMRLEFFIHGALCVAFSGQCYISEAYTDNRSANRGECSQQCRMPGNLSTRKGEVIATNEHMLS
LKDNNQTENLEALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQQLDAIMARRPEFEPSSHGRCSYSFVPDPDKSFNRGKTD
YFVHDRKPGIADFRTPKYLGIDVGKVSKIAKDHIVVDSNAEFNNGDGLGFFAKNYEKARLSDDKLTGFRVNRAEGNVLYL
KTVPEDLRVGVTLYRNHDQAFEMLLAKESAERLVTVNFALAEREQGLALTAFDNHGHSVTVTADFDKQQAKDIDRNCEGL
KKNLGKLGNTDFCLGEIELGDAAAVFAPASVINNLRRDAVEALGQARIQGYQRPTPWERDDSVRYPQRSMTYLSNVANQK
AKDFYTRHGVVSIRDAYEVRPVKGDAPLMITKHCIRYSYNMCPKEVPGIKADPLQMELGGKEFKLVFDCHKCEMLVVG

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=630, Percent_Identity=49.2063492063492, Blast_Score=593, Evalue=1e-170,
Organism=Escherichia coli, GI1789548, Length=306, Percent_Identity=30.0653594771242, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788397, Length=455, Percent_Identity=26.1538461538462, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 71157; Mature: 71025

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEGVEIFIPGKPQALVTPEPVKLADNKLELLAPAKNADYGIEAIRHGADAVYIGAPAF
CCCCCEEEEECCCCCEEECCCCCEECCCCEEEEECCCCCCCCHHHHHCCCCEEEECCCCC
GARHTAGNSIADIARLCEFAHRYHAQVFVTVNTILFDSELEDARKLIWEVYEAGADAIIV
CCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEE
QDIGLLELDLPPIALHASTQMDNRVPEKVAFLEHVGFSQAVLARELSLTQIRAVAAETKM
ECCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RLEFFIHGALCVAFSGQCYISEAYTDNRSANRGECSQQCRMPGNLSTRKGEVIATNEHML
EEEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCEEE
SLKDNNQTENLEALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQQLDAIMARRPEFEPSSH
EECCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GRCSYSFVPDPDKSFNRGKTDYFVHDRKPGIADFRTPKYLGIDVGKVSKIAKDHIVVDSN
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCHHHHHHHHHCCEEEECC
AEFNNGDGLGFFAKNYEKARLSDDKLTGFRVNRAEGNVLYLKTVPEDLRVGVTLYRNHDQ
CCCCCCCCCEEHHCCCCHHCCCCCCCCCEEEEECCCCEEEEEECCCCHHCCEEEEECCHH
AFEMLLAKESAERLVTVNFALAEREQGLALTAFDNHGHSVTVTADFDKQQAKDIDRNCEG
HHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
LKKNLGKLGNTDFCLGEIELGDAAAVFAPASVINNLRRDAVEALGQARIQGYQRPTPWER
HHHHHHHCCCCCEEEEEEECCCCHHHEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DDSVRYPQRSMTYLSNVANQKAKDFYTRHGVVSIRDAYEVRPVKGDAPLMITKHCIRYSY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCCCCCHHHHHHHHHHC
NMCPKEVPGIKADPLQMELGGKEFKLVFDCHKCEMLVVG
CCCCCCCCCCCCCCEEEECCCCEEEEEEEECCEEEEEEC
>Mature Secondary Structure 
STEGVEIFIPGKPQALVTPEPVKLADNKLELLAPAKNADYGIEAIRHGADAVYIGAPAF
CCCCEEEEECCCCCEEECCCCCEECCCCEEEEECCCCCCCCHHHHHCCCCEEEECCCCC
GARHTAGNSIADIARLCEFAHRYHAQVFVTVNTILFDSELEDARKLIWEVYEAGADAIIV
CCCCCCCCHHHHHHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEE
QDIGLLELDLPPIALHASTQMDNRVPEKVAFLEHVGFSQAVLARELSLTQIRAVAAETKM
ECCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RLEFFIHGALCVAFSGQCYISEAYTDNRSANRGECSQQCRMPGNLSTRKGEVIATNEHML
EEEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCEEE
SLKDNNQTENLEALIDAGIRSFKIEGRLKDLSYVKNVTAHYRQQLDAIMARRPEFEPSSH
EECCCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GRCSYSFVPDPDKSFNRGKTDYFVHDRKPGIADFRTPKYLGIDVGKVSKIAKDHIVVDSN
CEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEECCHHHHHHHHHCCEEEECC
AEFNNGDGLGFFAKNYEKARLSDDKLTGFRVNRAEGNVLYLKTVPEDLRVGVTLYRNHDQ
CCCCCCCCCEEHHCCCCHHCCCCCCCCCEEEEECCCCEEEEEECCCCHHCCEEEEECCHH
AFEMLLAKESAERLVTVNFALAEREQGLALTAFDNHGHSVTVTADFDKQQAKDIDRNCEG
HHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
LKKNLGKLGNTDFCLGEIELGDAAAVFAPASVINNLRRDAVEALGQARIQGYQRPTPWER
HHHHHHHCCCCCEEEEEEECCCCHHHEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DDSVRYPQRSMTYLSNVANQKAKDFYTRHGVVSIRDAYEVRPVKGDAPLMITKHCIRYSY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCCCCCHHHHHHHHHHC
NMCPKEVPGIKADPLQMELGGKEFKLVFDCHKCEMLVVG
CCCCCCCCCCCCCCEEEECCCCEEEEEEEECCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]