| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is ywrD [H]
Identifier: 119773807
GI number: 119773807
Start: 824619
End: 826325
Strand: Direct
Name: ywrD [H]
Synonym: Sama_0669
Alternate gene names: 119773807
Gene position: 824619-826325 (Clockwise)
Preceding gene: 119773806
Following gene: 119773808
Centisome position: 19.15
GC content: 54.89
Gene sequence:
>1707_bases ATGAACCGGTTTACAATCACTATTTTAGCCCTGGCCGCTATCGGACTGGGCTGCAGCGAAGGAGTGTTGGCCATGGACAG GATCACAGGTAAGGCGTTTGCCAGTCGTTCGGAGGTATATGCCACCCAGGGCATGGCGGCGACCAGCCAGCCTTTGGCCA CTCAAGTTGCTCTGGATATATTGAAAGCCGGCGGCAGTGCGGTGGATGCCGCCATTGCCGCCAATGCCATGTTGGGGCTG GTAGAACCCACAGGCTCGGGTGTCGGTGGCGACCTGTTTGCCATCGTCTGGAGCGCTAAAGACAAACGCTTATACGGCTT AAATGCCTCGGGCCGCAGCCCAAAAACGCTCACGCTGGATATGCTTAAGGCGCAGGGACTTGAATTTTTACCGCCCTTTG GTCCATTGCCTGTGTCTGTGCCCGGCGCAGTGGATGGCTGGTTTGAGCTGCATGACCGCTTTGGCAAATTGCCAATGTCG CAAATTTTGTCGCCATCCATTGATTACGCGCGCAAGGGCTTCCCGGTTTCTGAACTCATCGCCTTTTATCTTGAAGGCAG CGCCCGACGTCTCGCCAAATATCCGGGGTTCAGTGAAACCTATATGCCCAATGGCAAAATGCCCGCCAGGGGCGACATCA TGAAAAATCCCGCCCTGGCCAACACCTACGAAAAAATAGCCAAGGGTGGCCGGGATGCGTTTTATAAGGGCGACATAGCC CGCAGCATAGACAAGTACATGAAAGCCAATGGCGGTTACCTCGGCTACGAGGACCTGGCCTCACATACCAGTGAGTGGGT TGAACCCGTATCGGTAAATTACCGCGGTTTTGATGTGTGGGAGCTGCCGCCAAACGGTCAGGGCATAGCAGCGCTGCAAA TTTTAAAAACGCTGGAGCCGTTTGATTTAAGAGCCATGGGTCATGACAGCGTTGAGTATGTGCACCATTTTGTGGAGGCT AAAAAGCTTGCCTTCGCTGACAGAGCGCGTTTTTACGCCGACATGGCCTTTGCTGATGTGCCCGTGAGTGAGCTTATTTC AGAGCGCTACAACCAAGAGCGTGCCAAGCAGATAGGCCCCAGAGCGGCCAAGTCGGTAGAGCCGGGCAATCCCAATCTGC AGCAGGGCGATACCGTGTATCTCACCACCGCAGACAGTGACGGTAACATGGTGTCACTTATTCAAAGTAATTTCCGCGGC ATGGGCTCGGGCATGACACCTCCGGATCTCGGCTTTGTACTGCAGGACAGAGGGCAGTTGTTTGATTTAACGCCGGGGCG CCCTAATTCTTACGCACCCGGCAAGCGTCCCTTCCATACCATCATTCCGGCGTTTGTGACCAAAGACGGTAAACCCTGGC TCAGTTTTGGGGTGATGGGCGGTGCCACACAGCCGCAAATGCATGCGCAAATTATCATTAATCTCATCGATTTTGACATG AACCTGCAGGAAGCCGGCGATGCGCCACGTATTCTGCATTCAGGCTCCAGTGAACCCACCGGCGAAGTGATGACCGATGG TGGTTATGTGAGCCTGGAGTCGGGCTTTTCCATGGAGACGCGTCGAGAACTGGTGAAAAAAGGCCATGTGCTCCGGGATG CCCTGGGGGAGTTTGGTGGTTATCAGGCTATCGGCATCAATGTGGAAACCGGTGTCTATCGCGGTGCTTCCGAGAGCCGC AAAGATGGTCAGGCCGCCGGCTATTAG
Upstream 100 bases:
>100_bases GTGTCAGCTTGTCTGCTGCGGCTGATACACCGGTAATCTTTGCTTAAACAGGTGATTATTGAGGTAAACCTGTGTAGTTT GTGTTCTGGGAGGACTCAGC
Downstream 100 bases:
>100_bases GGTGAATAACAAGCAATCTTGTGTAATGTGCGTCGGTCGGTGATATTTTTTCCTAAAGTACGGGATAATGTGACCGACAA AGACATACTCAGTAAGGCCT
Product: gamma-glutamyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 568; Mature: 568
Protein sequence:
>568_residues MNRFTITILALAAIGLGCSEGVLAMDRITGKAFASRSEVYATQGMAATSQPLATQVALDILKAGGSAVDAAIAANAMLGL VEPTGSGVGGDLFAIVWSAKDKRLYGLNASGRSPKTLTLDMLKAQGLEFLPPFGPLPVSVPGAVDGWFELHDRFGKLPMS QILSPSIDYARKGFPVSELIAFYLEGSARRLAKYPGFSETYMPNGKMPARGDIMKNPALANTYEKIAKGGRDAFYKGDIA RSIDKYMKANGGYLGYEDLASHTSEWVEPVSVNYRGFDVWELPPNGQGIAALQILKTLEPFDLRAMGHDSVEYVHHFVEA KKLAFADRARFYADMAFADVPVSELISERYNQERAKQIGPRAAKSVEPGNPNLQQGDTVYLTTADSDGNMVSLIQSNFRG MGSGMTPPDLGFVLQDRGQLFDLTPGRPNSYAPGKRPFHTIIPAFVTKDGKPWLSFGVMGGATQPQMHAQIIINLIDFDM NLQEAGDAPRILHSGSSEPTGEVMTDGGYVSLESGFSMETRRELVKKGHVLRDALGEFGGYQAIGINVETGVYRGASESR KDGQAAGY
Sequences:
>Translated_568_residues MNRFTITILALAAIGLGCSEGVLAMDRITGKAFASRSEVYATQGMAATSQPLATQVALDILKAGGSAVDAAIAANAMLGL VEPTGSGVGGDLFAIVWSAKDKRLYGLNASGRSPKTLTLDMLKAQGLEFLPPFGPLPVSVPGAVDGWFELHDRFGKLPMS QILSPSIDYARKGFPVSELIAFYLEGSARRLAKYPGFSETYMPNGKMPARGDIMKNPALANTYEKIAKGGRDAFYKGDIA RSIDKYMKANGGYLGYEDLASHTSEWVEPVSVNYRGFDVWELPPNGQGIAALQILKTLEPFDLRAMGHDSVEYVHHFVEA KKLAFADRARFYADMAFADVPVSELISERYNQERAKQIGPRAAKSVEPGNPNLQQGDTVYLTTADSDGNMVSLIQSNFRG MGSGMTPPDLGFVLQDRGQLFDLTPGRPNSYAPGKRPFHTIIPAFVTKDGKPWLSFGVMGGATQPQMHAQIIINLIDFDM NLQEAGDAPRILHSGSSEPTGEVMTDGGYVSLESGFSMETRRELVKKGHVLRDALGEFGGYQAIGINVETGVYRGASESR KDGQAAGY >Mature_568_residues MNRFTITILALAAIGLGCSEGVLAMDRITGKAFASRSEVYATQGMAATSQPLATQVALDILKAGGSAVDAAIAANAMLGL VEPTGSGVGGDLFAIVWSAKDKRLYGLNASGRSPKTLTLDMLKAQGLEFLPPFGPLPVSVPGAVDGWFELHDRFGKLPMS QILSPSIDYARKGFPVSELIAFYLEGSARRLAKYPGFSETYMPNGKMPARGDIMKNPALANTYEKIAKGGRDAFYKGDIA RSIDKYMKANGGYLGYEDLASHTSEWVEPVSVNYRGFDVWELPPNGQGIAALQILKTLEPFDLRAMGHDSVEYVHHFVEA KKLAFADRARFYADMAFADVPVSELISERYNQERAKQIGPRAAKSVEPGNPNLQQGDTVYLTTADSDGNMVSLIQSNFRG MGSGMTPPDLGFVLQDRGQLFDLTPGRPNSYAPGKRPFHTIIPAFVTKDGKPWLSFGVMGGATQPQMHAQIIINLIDFDM NLQEAGDAPRILHSGSSEPTGEVMTDGGYVSLESGFSMETRRELVKKGHVLRDALGEFGGYQAIGINVETGVYRGASESR KDGQAAGY
Specific function: GGT PLAYS A KEY ROLE IN THE GAMMA-GLUTAMYL CYCLE, A PATHWAY FOR THE SYNTHESIS AND DEGRADATION OF GLUTATHIONE. [C]
COG id: COG0405
COG function: function code E; Gamma-glutamyltransferase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gamma-glutamyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI73915092, Length=555, Percent_Identity=28.8288288288288, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI73915090, Length=555, Percent_Identity=28.8288288288288, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI73915096, Length=555, Percent_Identity=28.8288288288288, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI73915094, Length=555, Percent_Identity=28.8288288288288, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI113429324, Length=556, Percent_Identity=28.2374100719424, Blast_Score=161, Evalue=2e-39, Organism=Homo sapiens, GI113429326, Length=561, Percent_Identity=27.6292335115865, Blast_Score=158, Evalue=1e-38, Organism=Homo sapiens, GI153266885, Length=551, Percent_Identity=26.1343012704174, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI153266901, Length=552, Percent_Identity=26.0869565217391, Blast_Score=133, Evalue=6e-31, Organism=Homo sapiens, GI109148539, Length=508, Percent_Identity=26.7716535433071, Blast_Score=120, Evalue=3e-27, Organism=Homo sapiens, GI153266907, Length=550, Percent_Identity=24.7272727272727, Blast_Score=119, Evalue=7e-27, Organism=Escherichia coli, GI1789856, Length=554, Percent_Identity=32.8519855595668, Blast_Score=252, Evalue=4e-68, Organism=Caenorhabditis elegans, GI193208245, Length=474, Percent_Identity=27.6371308016878, Blast_Score=147, Evalue=2e-35, Organism=Caenorhabditis elegans, GI193208247, Length=474, Percent_Identity=27.6371308016878, Blast_Score=146, Evalue=2e-35, Organism=Caenorhabditis elegans, GI17506189, Length=528, Percent_Identity=24.2424242424242, Blast_Score=135, Evalue=7e-32, Organism=Caenorhabditis elegans, GI212646519, Length=474, Percent_Identity=25.9493670886076, Blast_Score=129, Evalue=6e-30, Organism=Caenorhabditis elegans, GI72000294, Length=474, Percent_Identity=25.9493670886076, Blast_Score=128, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17542894, Length=502, Percent_Identity=25.4980079681275, Blast_Score=125, Evalue=4e-29, Organism=Saccharomyces cerevisiae, GI6323330, Length=474, Percent_Identity=25.3164556962025, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI161077880, Length=563, Percent_Identity=27.3534635879218, Blast_Score=162, Evalue=6e-40, Organism=Drosophila melanogaster, GI161077878, Length=563, Percent_Identity=27.3534635879218, Blast_Score=162, Evalue=6e-40, Organism=Drosophila melanogaster, GI45551474, Length=563, Percent_Identity=27.3534635879218, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI24642670, Length=563, Percent_Identity=27.3534635879218, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI24642666, Length=563, Percent_Identity=27.3534635879218, Blast_Score=162, Evalue=7e-40, Organism=Drosophila melanogaster, GI161077496, Length=525, Percent_Identity=25.3333333333333, Blast_Score=143, Evalue=4e-34, Organism=Drosophila melanogaster, GI18859893, Length=461, Percent_Identity=26.8980477223427, Blast_Score=133, Evalue=4e-31, Organism=Drosophila melanogaster, GI18859741, Length=476, Percent_Identity=25, Blast_Score=117, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000101 [H]
Pfam domain/function: PF01019 G_glu_transpept [H]
EC number: =2.3.2.2 [H]
Molecular weight: Translated: 61253; Mature: 61253
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFTITILALAAIGLGCSEGVLAMDRITGKAFASRSEVYATQGMAATSQPLATQVALDI CCCEEEHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LKAGGSAVDAAIAANAMLGLVEPTGSGVGGDLFAIVWSAKDKRLYGLNASGRSPKTLTLD HHCCCCHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEEHH MLKAQGLEFLPPFGPLPVSVPGAVDGWFELHDRFGKLPMSQILSPSIDYARKGFPVSELI HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHCCCCHHHHH AFYLEGSARRLAKYPGFSETYMPNGKMPARGDIMKNPALANTYEKIAKGGRDAFYKGDIA HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCHHH RSIDKYMKANGGYLGYEDLASHTSEWVEPVSVNYRGFDVWELPPNGQGIAALQILKTLEP HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCHHHHHHHHHCCC FDLRAMGHDSVEYVHHFVEAKKLAFADRARFYADMAFADVPVSELISERYNQERAKQIGP CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHCCC RAAKSVEPGNPNLQQGDTVYLTTADSDGNMVSLIQSNFRGMGSGMTPPDLGFVLQDRGQL HHHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCCCCCCCCCCCEECCCCCE FDLTPGRPNSYAPGKRPFHTIIPAFVTKDGKPWLSFGVMGGATQPQMHAQIIINLIDFDM EECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHEEHHHCCC NLQEAGDAPRILHSGSSEPTGEVMTDGGYVSLESGFSMETRRELVKKGHVLRDALGEFGG CHHHCCCCCHHHCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHCHHHHHHHHHHCC YQAIGINVETGVYRGASESRKDGQAAGY EEEEEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNRFTITILALAAIGLGCSEGVLAMDRITGKAFASRSEVYATQGMAATSQPLATQVALDI CCCEEEHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH LKAGGSAVDAAIAANAMLGLVEPTGSGVGGDLFAIVWSAKDKRLYGLNASGRSPKTLTLD HHCCCCHHHHHHHHHHHHEEECCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEEHH MLKAQGLEFLPPFGPLPVSVPGAVDGWFELHDRFGKLPMSQILSPSIDYARKGFPVSELI HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHCCCCHHHHH AFYLEGSARRLAKYPGFSETYMPNGKMPARGDIMKNPALANTYEKIAKGGRDAFYKGDIA HHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEECCHHH RSIDKYMKANGGYLGYEDLASHTSEWVEPVSVNYRGFDVWELPPNGQGIAALQILKTLEP HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEECCCCEEEEECCCCCCCHHHHHHHHHCCC FDLRAMGHDSVEYVHHFVEAKKLAFADRARFYADMAFADVPVSELISERYNQERAKQIGP CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHCCC RAAKSVEPGNPNLQQGDTVYLTTADSDGNMVSLIQSNFRGMGSGMTPPDLGFVLQDRGQL HHHCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHCCCCCCCCCCCCCEECCCCCE FDLTPGRPNSYAPGKRPFHTIIPAFVTKDGKPWLSFGVMGGATQPQMHAQIIINLIDFDM EECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHEEHHHCCC NLQEAGDAPRILHSGSSEPTGEVMTDGGYVSLESGFSMETRRELVKKGHVLRDALGEFGG CHHHCCCCCHHHCCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHCHHHHHHHHHHCC YQAIGINVETGVYRGASESRKDGQAAGY EEEEEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]